Jatropha Genome Database

JcCB0361141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0361141.10 + phase: 0 /partial
         (284 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g129240.1 U4/U6.U5 tri-snRNP-associated protein 3, re...   108   4e-24

>IMGA|Medtr8g129240.1 U4/U6.U5 tri-snRNP-associated protein 3,
           related chr08_pseudomolecule_IMGAG_V3 30443241-30442578
           E EGN_Mt090430 20090702
          Length = 186

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 65/94 (69%), Gaps = 7/94 (7%)

Query: 191 VSDFVDGIAREQLEKXXXXXXXXXXXXXXXXXXXXXXXXMMKKFGIPIGFDSTKGKPVPG 250
           VSDFVDGIA+EQ ++                        MMK  GIP+GFDSTKGKPVPG
Sbjct: 100 VSDFVDGIAKEQQQQKQKENGEEVDVNEDEIE-------MMKMMGIPVGFDSTKGKPVPG 152

Query: 251 ADVSGVRVVTKRQPRQYMNRRGGFNRPLPPERNR 284
           ADVSGVR VTKRQPRQYMNRRGGFNRPLP E+NR
Sbjct: 153 ADVSGVRAVTKRQPRQYMNRRGGFNRPLPAEKNR 186