Jatropha Genome Database

JcCB0360521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360521.10 - phase: 0 /partial
         (380 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235488_7.1 HMG-I and HMG-Y, DNA-binding AC235488.1 16550-...   518   e-147
IMGA|AC233100_6.1 STAG AC233100.6 23979-21603 E EGN_Mt090430 200...   489   e-138
IMGA|Medtr7g106690.1 Sister-chromatide cohesion protein, putativ...    81   7e-16

>IMGA|AC235488_7.1 HMG-I and HMG-Y, DNA-binding AC235488.1
           16550-28206 E EGN_Mt090430 20090702
          Length = 1144

 Score =  518 bits (1333), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/365 (72%), Positives = 294/365 (80%)

Query: 5   QACGAKFHIKXXXXXXXXXXXXXXXXXXXARKGEVEDYQSTKRKEFKNFKENLVSFWDIL 64
           +ACGAKFH K                   A++GEVEDYQ++K+KEFKNFKENL SFWD L
Sbjct: 113 EACGAKFHDKRDLMHEIDVDDVVVALVNCAKRGEVEDYQNSKKKEFKNFKENLESFWDNL 172

Query: 65  VVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASLMGLQLVKSFISVAKTLGAQRE 124
           V ECQ+GPLFD+VLFDKCMDYIIALSCTPPRVYRQ+ASLMGL LV S+I+VA  LG QRE
Sbjct: 173 VRECQHGPLFDQVLFDKCMDYIIALSCTPPRVYRQVASLMGLSLVTSYITVANMLGVQRE 232

Query: 125 TTQRQLNAEKKKRTEGPRLESLNKRLSVTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNIR 184
           TT+RQL+AEKKK+TEGPR+ESLNKR S  HEKI +LE+MMRKIFTGLFVHRYRDIDPNIR
Sbjct: 233 TTRRQLDAEKKKKTEGPRMESLNKRFSDMHEKITLLEEMMRKIFTGLFVHRYRDIDPNIR 292

Query: 185 MSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDMDDNVPTLG 244
           MSCIESLG WILSYPSLFLQDLYLKYLGWTLNDK+AGVRK SI ALQNLY+MDDN+ TLG
Sbjct: 293 MSCIESLGAWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKTSIRALQNLYEMDDNIQTLG 352

Query: 245 LFTERFSNRMIELADDIDVSVAVSAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXADIRRA 304
           LFTERFS RMIELADDIDV+VAV AIGLVKQL RHQ                   +IR A
Sbjct: 353 LFTERFSGRMIELADDIDVAVAVQAIGLVKQLFRHQLIPEDDLGNLYDLLIDDPPEIRHA 412

Query: 305 IGELVYDHLIAQKFNGSQSGTRGNDNGSSVVHLSRMLQILREFSTDPILSIYVIDDVWEY 364
           IG LVYDHLIAQKF  SQS +RG +   S VHL+RML+IL EF  +PIL+IYVIDDVW+Y
Sbjct: 413 IGALVYDHLIAQKFISSQSESRGENVSPSEVHLTRMLRILDEFPPNPILTIYVIDDVWDY 472

Query: 365 MKAMK 369
           MKA+K
Sbjct: 473 MKAIK 477


>IMGA|AC233100_6.1 STAG AC233100.6 23979-21603 E EGN_Mt090430
           20090702
          Length = 771

 Score =  489 bits (1258), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/366 (65%), Positives = 285/366 (77%), Gaps = 1/366 (0%)

Query: 5   QACGAKFHIKXXXXXXXXXXXXXXXXXXXARK-GEVEDYQSTKRKEFKNFKENLVSFWDI 63
           + CGAKFH K                   A+K GEVE YQ++ + EFK+ KENL SF D 
Sbjct: 91  EVCGAKFHDKRVLMHEINVNDVVVALVNYAKKSGEVECYQNSIKSEFKSLKENLESFLDN 150

Query: 64  LVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASLMGLQLVKSFISVAKTLGAQR 123
           LV ECQ+GP FDKVLF+KCM YIIALSCTPPRVYRQ+ASLMGL L+ S+I++A  LG QR
Sbjct: 151 LVRECQHGPFFDKVLFEKCMKYIIALSCTPPRVYRQVASLMGLSLITSYITIANMLGVQR 210

Query: 124 ETTQRQLNAEKKKRTEGPRLESLNKRLSVTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNI 183
           + T+RQL+ +KKK+TEGPR+E+LN +LS  HEKI  LE+MM KIFTGLFVHRYR++DPNI
Sbjct: 211 DITRRQLDGQKKKKTEGPRMETLNIKLSDMHEKITSLEEMMGKIFTGLFVHRYRNLDPNI 270

Query: 184 RMSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDMDDNVPTL 243
           RMSCIESLGVWILSYPS+FL+D+YLKYLGWTLNDK AGVRK+SI ALQNLY+MDDNVP+L
Sbjct: 271 RMSCIESLGVWILSYPSIFLKDVYLKYLGWTLNDKYAGVRKSSIRALQNLYEMDDNVPSL 330

Query: 244 GLFTERFSNRMIELADDIDVSVAVSAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXADIRR 303
           GLFTER+S RMI+LADDIDV+VAV AIGLVKQL+RHQ                   +IR 
Sbjct: 331 GLFTERYSGRMIDLADDIDVAVAVQAIGLVKQLIRHQLITGDELGNLYNLLTDDPPEIRH 390

Query: 304 AIGELVYDHLIAQKFNGSQSGTRGNDNGSSVVHLSRMLQILREFSTDPILSIYVIDDVWE 363
           AIG LVYD+LIA+KFN S+S +RG ++ SS VHL RML+IL EF  +PIL+  +IDDVW+
Sbjct: 391 AIGALVYDYLIAKKFNSSESESRGENDNSSKVHLERMLRILDEFPPNPILTSCMIDDVWD 450

Query: 364 YMKAMK 369
           YM+AMK
Sbjct: 451 YMEAMK 456


>IMGA|Medtr7g106690.1 Sister-chromatide cohesion protein, putative
           chr07_pseudomolecule_IMGAG_V3 24761883-24762108 E
           EGN_Mt090430 20090702
          Length = 67

 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 5/68 (7%)

Query: 146 LNKRLSVTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNIRMSCIESLGVWILSYPSLFLQD 205
           L K L    +KI +LE+MM KIFT LFVHRYR+I+ NIRMSCIES     L +PSL LQ+
Sbjct: 2   LGKHLDTEEKKITLLEEMMSKIFTRLFVHRYREINSNIRMSCIES-----LEHPSLLLQN 56

Query: 206 LYLKYLGW 213
           +YLK LG+
Sbjct: 57  IYLKRLGF 64