Jatropha Genome Database

JcCB0360101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360101.10 + phase: 0 /partial
         (62 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g121920.1 Zinc finger, DHHC-type chr04_pseudomolecule...   117   1e-27
IMGA|Medtr4g121920.2 Zinc finger, DHHC-type chr04_pseudomolecule...   117   1e-27
IMGA|Medtr4g121920.3 Palmitoyltransferase TIP1, putative chr04_p...   112   5e-26
IMGA|Medtr8g122240.1 Zinc finger, DHHC-type chr08_pseudomolecule...    91   1e-19

>IMGA|Medtr4g121920.1 Zinc finger, DHHC-type
           chr04_pseudomolecule_IMGAG_V3 28743302-28750995 E
           EGN_Mt090430 20090702
          Length = 540

 Score =  117 bits (294), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/62 (80%), Positives = 56/62 (90%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQV 60
           IARN+TTNELAN+ RY YLRGPDGRFRNPYNHG  KNCADF++ G+TDDD IAWPPLQQV
Sbjct: 479 IARNVTTNELANSTRYEYLRGPDGRFRNPYNHGWWKNCADFLLLGHTDDDAIAWPPLQQV 538

Query: 61  AS 62
           A+
Sbjct: 539 AT 540


>IMGA|Medtr4g121920.2 Zinc finger, DHHC-type
           chr04_pseudomolecule_IMGAG_V3 28746630-28750995 E
           EGN_Mt090430 20090702
          Length = 298

 Score =  117 bits (293), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/62 (80%), Positives = 56/62 (90%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQV 60
           IARN+TTNELAN+ RY YLRGPDGRFRNPYNHG  KNCADF++ G+TDDD IAWPPLQQV
Sbjct: 237 IARNVTTNELANSTRYEYLRGPDGRFRNPYNHGWWKNCADFLLLGHTDDDAIAWPPLQQV 296

Query: 61  AS 62
           A+
Sbjct: 297 AT 298


>IMGA|Medtr4g121920.3 Palmitoyltransferase TIP1, putative
          chr04_pseudomolecule_IMGAG_V3 28749202-28750995 E
          EGN_Mt090430 20090702
          Length = 81

 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 56/62 (90%)

Query: 1  IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQV 60
          IARN+TTNELAN+ RY YLRGPDGRFRNPYNHG  KNCADF++ G+TDDD IAWPPLQQV
Sbjct: 20 IARNVTTNELANSTRYEYLRGPDGRFRNPYNHGWWKNCADFLLLGHTDDDAIAWPPLQQV 79

Query: 61 AS 62
          A+
Sbjct: 80 AT 81


>IMGA|Medtr8g122240.1 Zinc finger, DHHC-type
           chr08_pseudomolecule_IMGAG_V3 28532611-28540494 F
           EGN_Mt090430 20090702
          Length = 642

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDE 51
           I+RNITTNE+ANA+RY YLRGP GRFRNPY+HG +KNC+DF+I GY +D E
Sbjct: 492 ISRNITTNEMANALRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDLE 542