Jatropha Genome Database

JcCB0359851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0359851.10 + phase: 0 /partial
         (460 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074690.1 hypothetical protein chr08_pseudomolecule_I...    52   8e-07
IMGA|Medtr5g047540.1 Pentatricopeptide repeat chr05_pseudomolecu...    49   4e-06
IMGA|Medtr5g048260.1 Pentatricopeptide repeat chr05_pseudomolecu...    49   5e-06

>IMGA|Medtr8g074690.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 14925031-14923055 E
           EGN_Mt090430 20090702
          Length = 265

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 4/157 (2%)

Query: 148 PASTIIRKLIEMEQYPPVTAWSAILAHMSLTAPGAYLASELILEIGYLFQDGRVDPRKKS 207
           PAS I R ++ +   P V   S I+ H+  T  G  L S  +  +     D     R K 
Sbjct: 106 PASIIPRLMLNIGFVPSVQFLSLIVFHIVKTEIGTCLVSNYLSRVC----DFNSSLRDKK 161

Query: 208 NAPLIAMRPNTTSMNIALAGCLLFGTTKKAEQLLDMMPRIFIKVNAALLITMANIYERNG 267
               I ++P+T   N+ L  C+      K  +L+++M +     +A  ++ +  I + NG
Sbjct: 162 AQHAIVLKPDTLIFNLFLDACVRLKLCLKGLRLIELMLQTGTVADAHSIVIILQILDMNG 221

Query: 268 RREELKKLQRHVDEAQGLSDIQFRQFYNCLLTCHLKF 304
            R E+ +L+ H+D         + QF + L    L F
Sbjct: 222 LRYEMMELKCHIDGVSAAYVQHYCQFNDSLSRLALGF 258


>IMGA|Medtr5g047540.1 Pentatricopeptide repeat
           chr05_pseudomolecule_IMGAG_V3 20073933-20076426 E
           EGN_Mt090430 20090702
          Length = 664

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 31/257 (12%)

Query: 72  NDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMD-IRWLEKAYGLVEQAIGESKQNLLEK 130
           ++AW  F+       FP K + N +L   +   D I  L++A+      I +   NLLE 
Sbjct: 83  DEAWKSFKTLTTHHSFPPKPLTNSLLTHLSSLPDNILNLKRAFASTLFLI-QKHPNLLEF 141

Query: 131 EALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAP--GAYLASEL 188
             +  +   +       PA +++R + +   + P   W  +L  ++       A+L    
Sbjct: 142 NTIHAILLSIKSANTAPPAFSLVRSMFKYRFFIPFHLWGGVLVDIARNNDNLAAFLP--- 198

Query: 189 ILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIAL-AGCLLFGTTKKAEQLLDMMPRI 247
                 LF++   + R   +  L  M P+  S N AL A C    +   A +++++M ++
Sbjct: 199 ------LFEE---NCRVAFDEKLEFMIPDVASCNAALEACCFCLQSVTDANRVVEIMSKL 249

Query: 248 FIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQF------RQFYNCLLTCH 301
            +K +      +A +Y        LK LQ  +DE + L  + F      + FY+ L++ +
Sbjct: 250 GVKPDVFSFGFLAYLY-------ALKGLQDKIDELKVLM-VGFGYSKNNKCFYSNLISGY 301

Query: 302 LKFGDLDSASSMVLKML 318
           +K  +L S  S +L  L
Sbjct: 302 VKSANLVSVESTILSSL 318


>IMGA|Medtr5g048260.1 Pentatricopeptide repeat
           chr05_pseudomolecule_IMGAG_V3 20390320-20388318 E
           EGN_Mt090430 20090702
          Length = 660

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 31/257 (12%)

Query: 72  NDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMD-IRWLEKAYGLVEQAIGESKQNLLEK 130
           ++AW  F+       FP K + N +L   +   D I  L++A+      I +   NLLE 
Sbjct: 79  DEAWKSFKTLTTHHSFPPKPLTNSLLTHLSSLPDNILNLKRAFASTLFLI-QKHPNLLEF 137

Query: 131 EALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAP--GAYLASEL 188
             +  +   +       PA +++R + +   + P   W  +L  ++       A+L    
Sbjct: 138 NTIHAILLSIKSANTAPPAFSLVRSMFKYRFFIPFHLWGGVLVDIARNNDNLAAFLP--- 194

Query: 189 ILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIAL-AGCLLFGTTKKAEQLLDMMPRI 247
                 LF++   + R   +  L  M P+  S N AL A C    +   A +++++M ++
Sbjct: 195 ------LFEE---NCRVAFDEKLEFMIPDVASCNAALEACCFCLQSVTDANRVVEIMSKL 245

Query: 248 FIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQF------RQFYNCLLTCH 301
            +K +      +A +Y        LK LQ  +DE + L  + F      + FY+ L++ +
Sbjct: 246 GVKPDVFSFGFLAYLY-------ALKGLQDKIDELKVLM-VGFGYSKNNKCFYSNLISGY 297

Query: 302 LKFGDLDSASSMVLKML 318
           +K  +L S  S +L  L
Sbjct: 298 VKSANLVSVESTILSSL 314