Jatropha Genome Database

JcCB0351641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0351641.10 + phase: 0 /partial
         (130 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g087280.1 Conserved hypothetical protein 48; Radical ...   148   8e-37

>IMGA|Medtr5g087280.1 Conserved hypothetical protein 48; Radical SAM
           chr05_pseudomolecule_IMGAG_V3 33676277-33681196 E
           EGN_Mt090430 20090702
          Length = 409

 Score =  148 bits (373), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 97/126 (76%), Gaps = 9/126 (7%)

Query: 6   MAMLQHVCSVPLARAVR-QPHSFTIVSSRKLRTTSSAVSPPRTSHVDPRVLLGMSEPELQ 64
           M++L H  S+PLAR VR  P +   +S     T+SS    PRT+    +VLLG+SE ELQ
Sbjct: 1   MSLLHHY-SMPLARVVRPSPRTRAAIS---FATSSS----PRTTIPQSQVLLGLSETELQ 52

Query: 65  QLANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTVTA 124
           +LA DFGQQ +RGKQL+HLIY+RKVK+IQ+F+Q+PQAFR+ELEEAGWK+GRSPI+ TV A
Sbjct: 53  KLALDFGQQGFRGKQLYHLIYKRKVKDIQEFTQVPQAFRNELEEAGWKVGRSPIFNTVVA 112

Query: 125 ADGTVK 130
            DGTVK
Sbjct: 113 TDGTVK 118