Jatropha Genome Database

JcCB0347911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0347911.10 + phase: 0 /partial
         (316 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g021700.1 NAD-dependent epimerase/dehydratase; Short-...   591   e-169
IMGA|Medtr5g021730.1 NAD-dependent epimerase/dehydratase; Short-...   584   e-167
IMGA|Medtr5g012090.1 NAD-dependent epimerase/dehydratase chr05_p...    48   5e-06

>IMGA|Medtr5g021700.1 NAD-dependent epimerase/dehydratase;
           Short-chain dehydrogenase/reductase SDR; GDP-mannose
           4,6-dehydratase chr05_pseudomolecule_IMGAG_V3
           8340648-8338692 E EGN_Mt090430 20090702
          Length = 369

 Score =  591 bits (1523), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/315 (89%), Positives = 293/315 (93%), Gaps = 4/315 (1%)

Query: 1   MATKDTAGSGSATVNGDASAATPPQKHKIALITGITGQDGSYLTEFLLNKGYEVHGLIRR 60
           MA   +     +T NGD    TPP + K+ALITGITGQDGSYLTEFLLNKGY VHGLIRR
Sbjct: 1   MADSSSKTPAPSTTNGDT---TPPPR-KVALITGITGQDGSYLTEFLLNKGYSVHGLIRR 56

Query: 61  SSNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAV 120
           SSNFNTQRI+HIY+DPHNAHKA MKLHYADL+DASSLRRWLDTILPDEVYNLAAQSHVAV
Sbjct: 57  SSNFNTQRIDHIYVDPHNAHKAHMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAV 116

Query: 121 SFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFH 180
           SFEIPDYTADVVATGALRLLEAVRSHI ATGRSHIRYYQAGSSEMFGSTPPPQSETTPFH
Sbjct: 117 SFEIPDYTADVVATGALRLLEAVRSHIDATGRSHIRYYQAGSSEMFGSTPPPQSETTPFH 176

Query: 181 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKTGL 240
           PRSPYAASK AAHWYTVNYREAYG+FACNGILFNHESPRRGENFVTRKITRAVGRIK GL
Sbjct: 177 PRSPYAASKVAAHWYTVNYREAYGIFACNGILFNHESPRRGENFVTRKITRAVGRIKIGL 236

Query: 241 QNKLFLGNLSASRDWGFAGDYVEAMWMMLQQEMPDDYVVATEESHTVEEFLEVAFGYVGL 300
           Q+KLFLGNLSASRDWGFAGDYVEAMW+MLQQE  DDYVVATE+SHTVEEFLEVAFGYVGL
Sbjct: 237 QSKLFLGNLSASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGL 296

Query: 301 NWKDHVVIDKRYFRP 315
           NWKDHVVIDKRYFRP
Sbjct: 297 NWKDHVVIDKRYFRP 311


>IMGA|Medtr5g021730.1 NAD-dependent epimerase/dehydratase;
           Short-chain dehydrogenase/reductase SDR; GDP-mannose
           4,6-dehydratase chr05_pseudomolecule_IMGAG_V3
           8349077-8347408 E EGN_Mt090430 20090702
          Length = 369

 Score =  584 bits (1505), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 279/315 (88%), Positives = 291/315 (92%), Gaps = 4/315 (1%)

Query: 1   MATKDTAGSGSATVNGDASAATPPQKHKIALITGITGQDGSYLTEFLLNKGYEVHGLIRR 60
           MA         +T NGD    TPP + K+ALITGITGQDGSYLTEFLLNKGY VHGLIRR
Sbjct: 1   MADSSPKTPTPSTTNGDT---TPPPR-KVALITGITGQDGSYLTEFLLNKGYSVHGLIRR 56

Query: 61  SSNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAV 120
           SSNFNTQRI+HIY+DPH+AHKA MKLHYADL+DAS+LRRWLDTILPDEVYNLAAQSHVAV
Sbjct: 57  SSNFNTQRIDHIYVDPHDAHKAHMKLHYADLSDASALRRWLDTILPDEVYNLAAQSHVAV 116

Query: 121 SFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFH 180
           SFEIPDYTADVVATGALRLLEAVRSHI ATGRSHIRYYQAGSSEMFGSTPPPQSETTPFH
Sbjct: 117 SFEIPDYTADVVATGALRLLEAVRSHIDATGRSHIRYYQAGSSEMFGSTPPPQSETTPFH 176

Query: 181 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKTGL 240
           PRSPYAASK AAHWYTVNYREAYG+FACNGILFNHESPRRGENFVTRKITR VGRIK GL
Sbjct: 177 PRSPYAASKVAAHWYTVNYREAYGIFACNGILFNHESPRRGENFVTRKITRVVGRIKIGL 236

Query: 241 QNKLFLGNLSASRDWGFAGDYVEAMWMMLQQEMPDDYVVATEESHTVEEFLEVAFGYVGL 300
           Q+KLFLGNLSASRDWGFAGDYVEAMW+MLQQE  DDYVVATE+SHTVEEFLEVAFGYVGL
Sbjct: 237 QSKLFLGNLSASRDWGFAGDYVEAMWLMLQQEKADDYVVATEDSHTVEEFLEVAFGYVGL 296

Query: 301 NWKDHVVIDKRYFRP 315
           NWKDHVVIDKRYFRP
Sbjct: 297 NWKDHVVIDKRYFRP 311


>IMGA|Medtr5g012090.1 NAD-dependent epimerase/dehydratase
           chr05_pseudomolecule_IMGAG_V3 3397353-3393321 E
           EGN_Mt090430 20090702
          Length = 430

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 93/238 (39%), Gaps = 13/238 (5%)

Query: 30  ALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQ-RINHIYIDPHNAHKARMKLHY 88
            L+TG +G  G +++  L  +G  V G+     NFN    IN          +A + +  
Sbjct: 92  VLVTGASGFVGMHVSLALKRRGDGVLGI----DNFNRYYDINLKRTRAKVLSRAGVFVVE 147

Query: 89  ADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIA 148
            D+ D   LR+  D +    V +LAAQ+ V  +   P+        G + LLE  +S   
Sbjct: 148 GDINDVHLLRKLFDVVAFTHVMHLAAQAGVRYAMRNPNSYVHSNIAGFVNLLEVSKS--- 204

Query: 149 ATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFAC 208
           A  +  I Y  + S     S  P   +     P S YAA+K A   +   Y   YGL   
Sbjct: 205 ANPQPAIVYASSSSVYGLNSKTPFSEKDRTDQPASLYAATKKAGEEFAHTYNHIYGLSVT 264

Query: 209 NGILFNHESPRRGENFVTRKITRAVGRIKTGLQNKLFLG--NLSASRDWGFAGDYVEA 264
               F    P    +      T+    I  G Q  +F      S +RD+ + GD V+ 
Sbjct: 265 GLRFFTVYGPWGRPDMAVYLFTK---DILKGKQITVFESPDGGSVTRDFTYIGDIVKG 319