Jatropha Genome Database

JcCB0342871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342871.10 - phase: 1 /pseudo/partial
         (162 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g123800.1 Glycosyl transferase, group 1; N-6 Adenine-...   234   2e-62
IMGA|Medtr6g012910.1 Glycosyl transferase, group 1 chr06_pseudom...   136   4e-33

>IMGA|Medtr3g123800.1 Glycosyl transferase, group 1; N-6
           Adenine-specific DNA methylase
           chr03_pseudomolecule_IMGAG_V3 31238660-31231370 E
           EGN_Mt090430 20090702
          Length = 663

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 121/134 (90%)

Query: 6   VKQSKKCFIWVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVRPDCP 65
           ++  K     +TNGI+V+EWDPSSDEHIA  YSADDLSGKV+CKIALQKELGLPVRPDCP
Sbjct: 407 LRDRKSILSGITNGIDVTEWDPSSDEHIASSYSADDLSGKVKCKIALQKELGLPVRPDCP 466

Query: 66  LIGFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWV 125
           +IGF+GRLDYQKGIDLIR A+PELM+DD+QFVMLGSG+ +YE+WMR +ES Y+DKFRGWV
Sbjct: 467 VIGFVGRLDYQKGIDLIRQAIPELMQDDVQFVMLGSGNPIYEDWMRATESLYKDKFRGWV 526

Query: 126 GFNVPISHRITAGC 139
           GFNVP+SHRITAGC
Sbjct: 527 GFNVPVSHRITAGC 540


>IMGA|Medtr6g012910.1 Glycosyl transferase, group 1
           chr06_pseudomolecule_IMGAG_V3 2547326-2554167 E
           EGN_Mt090430 20090702
          Length = 758

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 90/132 (68%), Gaps = 5/132 (3%)

Query: 13  FIWVTNGINVSEWDPSSDEHIA----FHYSADDL-SGKVQCKIALQKELGLPVRPDCPLI 67
           F  + NG++  +W+P  D H+      +Y+ + L +GK QCK ALQKELGLPVR D P+I
Sbjct: 516 FRGIVNGVDTKDWNPQFDVHLKSEGYTNYTLETLQTGKRQCKAALQKELGLPVREDVPII 575

Query: 68  GFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGF 127
            FIGRLD QKG+DLI  A+P +M  D+Q +MLG+G    EE +R  E  + DK RGWVGF
Sbjct: 576 AFIGRLDQQKGVDLIGEAIPWMMSHDVQLIMLGTGRPDLEEMLRQFEWQHHDKIRGWVGF 635

Query: 128 NVPISHRITAGC 139
           +V ++HRITAG 
Sbjct: 636 SVKMAHRITAGA 647