Jatropha Genome Database

JcCB0342441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342441.10 + phase: 0 
         (415 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g157420.1 Orn/DAP/Arg decarboxylase 2 chr03_pseudomol...   520   e-148
IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase chr05_pseudom...    77   1e-14

>IMGA|Medtr3g157420.1 Orn/DAP/Arg decarboxylase 2
           chr03_pseudomolecule_IMGAG_V3 41516251-41514746 E
           EGN_Mt090430 20090702
          Length = 428

 Score =  520 bits (1339), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/406 (61%), Positives = 314/406 (77%), Gaps = 2/406 (0%)

Query: 12  ILGAPGVRGKRVTHLSKD-GLTDFMQSIIFNKQNDKE-PFYVLDLGVVVSLMDKWTRALP 69
           I  A GV+G +VT LS +  ++DF+QSII  K  + + PF VLDL V++ LM+KWT  LP
Sbjct: 19  IFCASGVKGNKVTTLSSEVTISDFIQSIIKTKPTENDSPFSVLDLRVIIDLMNKWTTELP 78

Query: 70  MVRPFYAVKCNPDRALLGTLASLGSNFDCASRAEIESVLSLGVSPERIVYANPCKAESHI 129
            V+PFYAVKCNP+ +L+GTLASLGSNFDCASRAEIESVLSLGVSP++I+YANPCK+ESHI
Sbjct: 79  TVKPFYAVKCNPNISLIGTLASLGSNFDCASRAEIESVLSLGVSPDKIIYANPCKSESHI 138

Query: 130 QYAASVGVNLTTFDSRDELDKIRKWHPLCGLLIRIKAPDDGGARCPLGPKYGALAEEVKP 189
           +YAASVGVN+TTFD   E++KI+KWHP C LL+RIK  +D GAR  LG KYGAL  EV  
Sbjct: 139 KYAASVGVNVTTFDCAGEVEKIKKWHPKCELLLRIKPEEDSGARSCLGLKYGALHNEVPE 198

Query: 190 LLQAAQAAHLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGGF 249
           LL+AA  A LKV GVSFHIGSG  +++AY G            SRLGMPKM +L+IGGGF
Sbjct: 199 LLKAADMAGLKVTGVSFHIGSGGADAKAYHGAILLAKEVFETASRLGMPKMKILDIGGGF 258

Query: 250 TAGLQFDDAAVAIRSALQAYFPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREY 309
           T+G +FD+AA  +  A++ +F N+ +L +I EPGR+FAE+AFTLAT +IGKRVRGE+REY
Sbjct: 259 TSGSKFDEAAFNVNDAIKTHFGNDEDLVVIGEPGRYFAETAFTLATKVIGKRVRGEMREY 318

Query: 310 WINDGIYGSMNCLLYDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALDTVLKG 369
           WI+DGIYG++N +++D+A V C PL   S   N  CK  K Y STVFGPTCD++DTVLK 
Sbjct: 319 WIDDGIYGTLNNIVFDYAIVKCMPLRFGSKPENVICKDPKTYPSTVFGPTCDSVDTVLKE 378

Query: 370 HQLPELQINDWLVFPNMGAYTVAAGSNFNGFKTGAILTYLAYSSSS 415
           ++LPEL++NDWLVFPNMGAYT ++G+NFNGF + A   ++A S+ S
Sbjct: 379 YELPELKVNDWLVFPNMGAYTTSSGTNFNGFSSSAEHIHIACSTPS 424


>IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase
           chr05_pseudomolecule_IMGAG_V3 8835936-8840655 E
           EGN_Mt090430 20090702
          Length = 483

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 157/400 (39%), Gaps = 52/400 (13%)

Query: 25  HLSKDGLTDFMQSIIFNKQNDKEPFYVLDLGVVVSLMDKWTRALPMVRPF--YAVKCNPD 82
           H     + + M+S+      +K PFY+     +   ++ +  AL  +     YA+K N +
Sbjct: 75  HCENLKVAEIMESV------EKRPFYLYSKPQITRNVEAYKDALEGLTSIIGYAIKANNN 128

Query: 83  RALLGTLASLGSNFDCASRAEIESVLSLGVSPERIVYANPCKAESHIQYAASVGVNLTTF 142
             +L  L SLG      S  E++  L  G  P R ++    K    +  AA  GV     
Sbjct: 129 YKILEHLRSLGCGAVLVSGNELKLALRAGFDPTRCIFNGNGKILEDLVLAAEAGV-FVNI 187

Query: 143 DSRDELDKIRKWHPLCG----LLIRIKAPDDGGARCPL------GPKYGALAEEVKPLLQ 192
           DS  +L+ I     + G    +L+RI  PD      P         K+G   E+++  L 
Sbjct: 188 DSEFDLENIVAAARIAGKRVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 246

Query: 193 AAQA--AHLKVVGVSFHIGSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGG-- 248
           A +     LK+VG   H+GS  T    +R                G  +++ LNIGGG  
Sbjct: 247 AVKEHPVELKLVGAHCHLGSTITKVDIFRDAATIMVNYIDEIRAQGF-EVDYLNIGGGLG 305

Query: 249 ---FTAGLQFDDAAVAIRSALQAYFPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGE 305
              + AG         I +  +        LK+I EPGR    +   L + + G +  G 
Sbjct: 306 IDYYHAGAVLPKPRDLIDTVRELVLSRG--LKLIIEPGRSLIANTCCLVSRVTGVKTNGS 363

Query: 306 LREYWINDGIYGSMNCLL-------YDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGP 358
            + + + DG   SM  L+       Y H  +            +P     +  +  V GP
Sbjct: 364 -KNFIVIDG---SMAELIRPSLYDAYQHIELV-----------SPAPANAEITTFDVVGP 408

Query: 359 TCDALDTVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFN 398
            C++ D + KG +LP       LV  + GAY ++  S +N
Sbjct: 409 VCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYN 448