Jatropha Genome Database

JcCB0341981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341981.10 + phase: 0 /partial
         (348 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g110140.1 Transcriptional factor B3; Auxin response f...   335   2e-92
IMGA|Medtr7g121610.1 Transcriptional factor B3; Auxin response f...   161   6e-40
IMGA|Medtr7g121710.1 Transcriptional factor B3; Auxin response f...   160   7e-40
IMGA|Medtr1g120890.1 Transcriptional factor B3; Auxin response f...   119   3e-27

>IMGA|Medtr2g110140.1 Transcriptional factor B3; Auxin response
           factor; Aux/IAA_ARF_dimerisation
           chr02_pseudomolecule_IMGAG_V3 25776282-25779770 E
           EGN_Mt090430 20090702
          Length = 663

 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/314 (61%), Positives = 222/314 (70%), Gaps = 26/314 (8%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDG-QLQWQS 59
           VTWDEPDLL NVKRVSPWLVELVSNM +IHL+PFSPPRKKLR PQH DFPLD  Q Q  +
Sbjct: 355 VTWDEPDLLHNVKRVSPWLVELVSNMSMIHLAPFSPPRKKLRFPQHPDFPLDVVQFQIPT 414

Query: 60  FSGNPLGPSSPLCCLSD----NTPA-GIQGARHAQFGISLSDLQLNN-KLQSGMFLSSLQ 113
           FSGNP    +PLCCLS     N PA GIQGARHAQ GISLSDL LNN K Q G+F ++ +
Sbjct: 415 FSGNPF---NPLCCLSSSDNYNAPAAGIQGARHAQIGISLSDLHLNNNKFQLGVFPNNRE 471

Query: 114 RFNSHSRISESFVKGQTNSNENISCLLTMGNSN-----TNSDKSDNVKRHQFLLFGQPIL 168
             ++ S I+         S E+ISCLLT+GNS+       SD +DN  RHQFLLFGQPIL
Sbjct: 472 TISNVSNIT---TNHDNKSKESISCLLTIGNSHKRSLEIKSDNNDN--RHQFLLFGQPIL 526

Query: 169 TEQQISCSCSTDAVSQVITGKTYSDESPEKAKIHDVLGSAPEKQTSPEKTASTGFSWQSS 228
           TEQQIS   S+D V  +++ K    +  EK    D   S+  +Q SP K+++T  S    
Sbjct: 527 TEQQISRKDSSDDV--LLSKK----KDKEKWFFSDTTQSSISEQFSPAKSSTTSASADFC 580

Query: 229 TETGLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKG 288
            + GLD GHCKVFLESEDVGRTLDLS + SYEEL+ KLA MFGIERSEMLS VLYRDA G
Sbjct: 581 WQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMLSRVLYRDATG 640

Query: 289 AVKQTGEEPFSVFT 302
           AVKQTGEEPF  F+
Sbjct: 641 AVKQTGEEPFRYFS 654


>IMGA|Medtr7g121610.1 Transcriptional factor B3; Auxin response
           factor chr07_pseudomolecule_IMGAG_V3 28650966-28645297 H
           EGN_Mt090430 20090702
          Length = 667

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 114/172 (66%), Gaps = 8/172 (4%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEP+LL+NVKRV+PW VE+VSNMP I LSPF PPRKKLR+PQ  DFP+DGQ    +F
Sbjct: 386 VTWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTF 445

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSSLQR-FNSHS 119
             N L P+ P+  L + +PAG+QGARH  FG++L D      L  G+F  S Q+ FN+ +
Sbjct: 446 PNNLLSPNIPIFYLPETSPAGMQGARHGHFGVTLPDFH---NLPLGLFQPSFQQPFNNIA 502

Query: 120 RISESFVKG----QTNSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPI 167
            +  +        + N++EN+SC  ++  S  +S+K D+ K HQ +LFGQ I
Sbjct: 503 TMPMTVPNNPALQKPNTSENVSCSHSISTSAQSSEKPDHAKPHQLVLFGQTI 554


>IMGA|Medtr7g121710.1 Transcriptional factor B3; Auxin response
           factor chr07_pseudomolecule_IMGAG_V3 28714280-28708478 H
           EGN_Mt090430 20090702
          Length = 717

 Score =  160 bits (406), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 114/172 (66%), Gaps = 8/172 (4%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEP+LL+NVKRV+PW VE+VSNMP I LSPF PPRKKLR+PQ  DFP+DGQ    +F
Sbjct: 386 VTWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTF 445

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSSLQR-FNSHS 119
             N L P+ P+  L + +PAG+QGARH  FG++L D      L  G+F  S Q+ FN+ +
Sbjct: 446 PNNLLSPNIPIFYLPETSPAGMQGARHGHFGVTLPDFH---NLPLGLFQPSFQQPFNNIA 502

Query: 120 RISESFVKG----QTNSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPI 167
            +  +        + N++EN+SC  ++  S  +S+K D+ K HQ +LFGQ I
Sbjct: 503 TMPMTVPNNPALQKPNTSENVSCSHSISTSAQSSEKPDHAKPHQLVLFGQTI 554


>IMGA|Medtr1g120890.1 Transcriptional factor B3; Auxin response
           factor chr01_pseudomolecule_IMGAG_V3 26179316-26183204 E
           EGN_Mt090430 20090702
          Length = 619

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 117/217 (53%), Gaps = 28/217 (12%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           V WDEPDLLQNVK V+PWLVELVSNMP  +LSPF+PPRKK R  Q   F L  Q    S 
Sbjct: 362 VVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLMNQSSSPSI 421

Query: 61  SGNPL--GPSSPLCCLSDNT-----PAGIQGARHAQFGISLSD----LQLNNKLQSGMFL 109
           S   L     S LC + D T      + IQGARHAQFG + ++    +  N  LQ  MFL
Sbjct: 422 SNINLLNYTKSSLCNIQDTTTNSSFASSIQGARHAQFGPNYNNPSDLIPFNKLLQQDMFL 481

Query: 110 S--SLQRFNSHSRISES--------FVKGQTNSNENISCLLTMGNSNTNSDKSDNVK--- 156
              SL RFN    I+               T +N ++SCLL++GNS   S K  N++   
Sbjct: 482 GNLSLSRFNQQQPITRPPYGPYKSINNNNNTKTNVDLSCLLSVGNSG-QSFKESNIEAKA 540

Query: 157 ---RHQFLLFGQPILTEQQISCSCSTDAVSQVITGKT 190
               +  LLFG+ I TEQ  S    +D+VS+  + KT
Sbjct: 541 PHNHNHILLFGKIIHTEQNSSNISKSDSVSEGTSLKT 577