Jatropha Genome Database

JcCB0341321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.20 - phase: 0 /partial
         (115 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g092800.1 Peptidase C54 chr07_pseudomolecule_IMGAG_V3...   135   5e-33

>IMGA|Medtr7g092800.1 Peptidase C54 chr07_pseudomolecule_IMGAG_V3
           20520504-20516975 E EGN_Mt090430 20090702
          Length = 487

 Score =  135 bits (340), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 84/115 (73%), Gaps = 3/115 (2%)

Query: 1   VVNISRDGIGADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDSH 60
           VVNI+ D    +TSSYH +  RH+PL+SIDPSLAIGFYCRDKDDFD+FC  A+KLA++S+
Sbjct: 376 VVNITGDTQEPNTSSYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDDFCSRATKLAEESN 435

Query: 61  GAPLFTVAHSHKLPKSVGRTDTSNDNSGVQEDDSLGVMPMNDAEAPVNEDDWQLL 115
           GAPLFTVA S  LP  V     S D++  +EDDSL +  +NDA    NEDDWQ L
Sbjct: 436 GAPLFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDAG---NEDDWQFL 487