Jatropha Genome Database
- JcCB0341321.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0341321.10 + phase: 2 /partial
(214 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g134000.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 80 9e-16
IMGA|Medtr2g123260.1 Cyclin-like F-box; Galactose oxidase, centr... 54 4e-08
IMGA|Medtr2g123270.1 Cyclin-like F-box; chr02_pseudomolecule_IMG... 54 8e-08
IMGA|Medtr2g110510.1 Galactose oxidase, central; chr02_pseudomol... 52 2e-07
IMGA|Medtr8g112450.1 Cyclin-like F-box; chr08_pseudomolecule_IMG... 50 1e-06
IMGA|Medtr4g023380.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 49 2e-06
IMGA|Medtr4g025240.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 49 2e-06
IMGA|Medtr4g025380.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 49 2e-06
IMGA|Medtr4g023610.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 48 3e-06
IMGA|Medtr4g023420.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 48 3e-06
>IMGA|Medtr4g134000.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 32229345-32228037 F
EGN_Mt090430 20090702
Length = 341
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D +KNAL +A YD + +EW +L M +DRDEC G G+ FWVVSGY T+SQG F
Sbjct: 180 DENKNALKTAWAYDPKIDEWTMLAPMSQDRDECEGTVVGGE--FWVVSGYATESQGMFDD 237
Query: 61 DAECYDPDNGVWHKITGVWPFSSTSPRGATTI 92
AE D +G W ++ GVW + PR I
Sbjct: 238 SAEVLDIGSGQWRRVEGVWE-AGRCPRSCVDI 268
>IMGA|Medtr2g123260.1 Cyclin-like F-box; Galactose oxidase, central
chr02_pseudomolecule_IMGAG_V3 29855320-29854404 E
EGN_Mt090430 20090702
Length = 261
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 5 NALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFW---VVSGYGTDSQGQFRSD 61
N L SA YD+ + W LP+M+ +RDEC + G+N F VV GY + QG+F
Sbjct: 139 NVLKSAFAYDVANDVWVSLPDMVRERDECKAVFCAGNNGFGTIKVVGGYRMEMQGRFERS 198
Query: 62 AECYDPDNGVWHKITGVWPFSSTSPR 87
AE +D W + + +T PR
Sbjct: 199 AEEFDVATWWWDPVEEEFLDDATCPR 224
>IMGA|Medtr2g123270.1 Cyclin-like F-box;
chr02_pseudomolecule_IMGAG_V3 29860551-29859041 E
EGN_Mt090430 20090702
Length = 364
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDN---RFWVVSGYGTDSQGQ 57
D KNAL SA YD+ + W LP+M +RDEC + DN VV GY T+ QG+
Sbjct: 179 DEEKNALKSAFAYDVVDDMWIPLPDMARERDECKVVFCAKDNGSGTIKVVGGYRTEMQGR 238
Query: 58 FRSDAECYDPDNGVWHKITGVWPFSSTSPR 87
F AE + W + + +T PR
Sbjct: 239 FERSAEEFGVATWRWGPVEEEFLDDATCPR 268
>IMGA|Medtr2g110510.1 Galactose oxidase, central;
chr02_pseudomolecule_IMGAG_V3 26012364-26009887 E
EGN_Mt090430 20090702
Length = 364
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D++ N L SAE+YD W +LPNM R C +F D +F+V+ G + + +
Sbjct: 170 DKYGNVLKSAELYDSASCTWELLPNMHTPRRLCS--SFFMDGKFYVIGGMSSTTVSL--T 225
Query: 61 DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVN 97
E YD W KI G++P+ + + A +V+ V+
Sbjct: 226 CGEEYDLSTRSWRKIEGMYPYVNVGAQ-APPLVAVVD 261
>IMGA|Medtr8g112450.1 Cyclin-like F-box;
chr08_pseudomolecule_IMGAG_V3 25256497-25257639 H
EGN_Mt090430 20090702
Length = 380
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D+H N L+S+E+Y+ + W +LP+M R C + D +F+V+ G G D Q
Sbjct: 181 DQHGNILSSSELYNSDTGTWEVLPDMNTPRRMCSAVFM--DEKFYVLGGVGVDKTTQLTC 238
Query: 61 DAECYDPDNGVWHKITGVWP 80
E +D W KI + P
Sbjct: 239 GEE-FDLKTRKWRKIPNMCP 257
>IMGA|Medtr4g023380.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 5058397-5059443 F
EGN_Mt090430 20090702
Length = 348
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D + L+SAE+Y+ + W LPNM + R C + +G +F+V+ G D + Q
Sbjct: 158 DPRGSILSSAELYNADTGNWETLPNMNKARKMCSSVFMDG--KFYVLGGIAADKKTQLTC 215
Query: 61 DAECYDPDNGVWHKITGVWP----FSSTSPRGATTIVSSVNKN 99
E +D N W +I + P S T P + + +V KN
Sbjct: 216 GEE-FDIKNKKWREIPNMLPVRTGVSETPPSFGSPPLIAVVKN 257
>IMGA|Medtr4g025240.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 5955147-5957425 E
EGN_Mt090430 20090702
Length = 460
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 5 NALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRSDAEC 64
N L+SAE+Y+ + W+ LPNM + R C + +G +F+V+ G D + Q E
Sbjct: 268 NILSSAELYNADTGNWKTLPNMNKARKMCSSVFMDG--KFYVLGGIAADKKTQLTCGEE- 324
Query: 65 YDPDNGVWHKITGVWPFSS----TSPRGATTIVSSVNKN 99
+D W +I ++P + T P + + +V KN
Sbjct: 325 FDMKTKKWREIPNMFPVRTGVFETPPSFGSPPLIAVVKN 363
>IMGA|Medtr4g025380.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 6012069-6011005 E
EGN_Mt090430 20090702
Length = 354
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D N L+SAE+Y+ + W+ LPNM + R C + +G +F+V+ G D + Q
Sbjct: 158 DPCGNILSSAELYNADTGNWKTLPNMNKARKMCSSVFMDG--KFYVLGGIAADKKTQLTC 215
Query: 61 DAECYDPDNGVWHKITGVWPFSS----TSPRGATTIVSSVNKN 99
E +D W +I ++P + T P + + +V KN
Sbjct: 216 GEE-FDMKTKKWREIPNMFPVRTGVFETPPSFGSPPLIAVVKN 257
>IMGA|Medtr4g023610.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 5209536-5210600 H
EGN_Mt090430 20090702
Length = 354
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D N L+SAE+Y+ + +W LPNM + R C G+ D +F+V+ G G D
Sbjct: 158 DPCGNILSSAEIYNSDTGKWETLPNMNKARKMCSGVFM--DEKFYVLGGIGADKTTPLTC 215
Query: 61 DAECYDPDNGVWHKITGVWPFSS 83
E +D W +I ++P +
Sbjct: 216 GEE-FDIKRKEWREIPNMFPMPT 237
>IMGA|Medtr4g023420.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 5082997-5081933 H
EGN_Mt090430 20090702
Length = 354
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D N L+SAE+Y+ + +W LPNM + R C G+ D +F+V+ G G D
Sbjct: 158 DPCGNILSSAEIYNSDTGKWETLPNMNKARKMCSGVFM--DEKFYVLGGIGADKTTPLTC 215
Query: 61 DAECYDPDNGVWHKITGVWPFSS 83
E +D W +I ++P +
Sbjct: 216 GEE-FDIKRKEWREIPNMFPMPT 237