Jatropha Genome Database

JcCB0340941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.20 - phase: 1 /partial
         (158 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g124940.1 Cyclin-like F-box chr04_pseudomolecule_IMGA...   269   5e-73
IMGA|Medtr7g096650.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...   191   2e-49
IMGA|Medtr5g074580.1 Leucine-rich repeat 2 chr05_pseudomolecule_...   169   4e-43
IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related ch...   166   6e-42
IMGA|Medtr5g089200.1 Leucine-rich repeat 2 chr05_pseudomolecule_...    81   2e-16
IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing su...    72   1e-13
IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing su...    67   4e-12

>IMGA|Medtr4g124940.1 Cyclin-like F-box
           chr04_pseudomolecule_IMGAG_V3 29352485-29348732 F
           EGN_Mt090430 20090702
          Length = 586

 Score =  269 bits (687), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/153 (85%), Positives = 138/153 (90%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P   +FGAVVKTC KLQRL+VSG LTDLTFEYIG+YAKNLETLSVAFAGSSDW MQCVL 
Sbjct: 434 PMDEAFGAVVKTCTKLQRLAVSGSLTDLTFEYIGKYAKNLETLSVAFAGSSDWAMQCVLV 493

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GCPKLRKLEIRD PFGNAALLSG +KYESMRSLWMS CKVTMNGCRLLA+E PRLNVEVM
Sbjct: 494 GCPKLRKLEIRDSPFGNAALLSGFDKYESMRSLWMSDCKVTMNGCRLLAQERPRLNVEVM 553

Query: 123 KEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTL 155
           +EE  DDSQA K+YVYRSVAGPRRDAPP VLTL
Sbjct: 554 QEEGGDDSQAGKLYVYRSVAGPRRDAPPFVLTL 586


>IMGA|Medtr7g096650.1 Cyclin-like F-box
           chr07_pseudomolecule_IMGAG_V3 21663069-21659617 E
           EGN_Mt090430 20090702
          Length = 571

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 119/161 (73%), Gaps = 6/161 (3%)

Query: 1   MNPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCV 60
           M P    FGA+V++C +L+RLS+SG LTD  F YIG YA+ LE LS+AFAG SD GM  V
Sbjct: 411 MQPLDEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYV 470

Query: 61  LGGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVE 120
           L GC K+RKLEIRDCPFG+ ALL+ + KYE+MRSLWMSSC+VT+  C+ LA++MPRLNVE
Sbjct: 471 LNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCEVTVEACKTLAKKMPRLNVE 530

Query: 121 VMKEE-----WSDDSQ-ADKVYVYRSVAGPRRDAPPSVLTL 155
           +  E      + +D Q  +K+Y+YR+VAG R DAP  V TL
Sbjct: 531 IFSESEQADCYVEDGQRVEKMYLYRTVAGKREDAPDYVWTL 571


>IMGA|Medtr5g074580.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 26963413-26966403 E
           EGN_Mt090430 20090702
          Length = 617

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 107/154 (69%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P    FGA+V  C KL RL+VSGLLTD  FEYIGRY K + TLSVAFAG +D  ++ VL 
Sbjct: 464 PMDEGFGAIVMNCKKLTRLAVSGLLTDRCFEYIGRYGKLIRTLSVAFAGDTDNSLKYVLE 523

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GCP L+KLEIRD PFG+ AL SGL  Y +MR LWMSSCK+T   C+ +AR +P++ +EV+
Sbjct: 524 GCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSSCKLTRQACQEVARALPQMVMEVI 583

Query: 123 KEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTLS 156
             +    +  + +Y+YRS+ GPR DAP +V  L 
Sbjct: 584 NNDVEAVNDIEILYMYRSLDGPRDDAPENVTILH 617


>IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related
           chr03_pseudomolecule_IMGAG_V3 38779268-38775322 E
           EGN_Mt090430 20090702
          Length = 594

 Score =  166 bits (419), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 104/155 (67%)

Query: 2   NPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVL 61
            P    FGA+V  C KL RL+VSGLLTDL F YIG Y K + TLSVAFAG +D G++ VL
Sbjct: 440 QPMDEGFGAIVMNCKKLTRLAVSGLLTDLAFCYIGLYGKMIRTLSVAFAGDTDSGLKYVL 499

Query: 62  GGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEV 121
            GC  L+KLEIRD PFG+ AL SGL  + +MR LWMSSCK+T   C+ +AR +PRL +EV
Sbjct: 500 DGCYNLQKLEIRDSPFGDGALRSGLHHFYNMRFLWMSSCKLTRQACQEVARTLPRLVLEV 559

Query: 122 MKEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTLS 156
           +  +       D +Y+YRS+  PR DAP  V  L+
Sbjct: 560 INTDEDTVDDFDILYMYRSLDKPRSDAPKVVTILN 594


>IMGA|Medtr5g089200.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 34621888-34616774 E
           EGN_Mt090430 20090702
          Length = 587

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 3   PWMRSFGAVVKTCNKLQRLSV---SGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQC 59
           P      A++  C KL+R ++    G LTD+   YIG+Y+ N+  + + + G +D G+  
Sbjct: 409 PLDNGVRALLTGCKKLRRFALYLRPGGLTDVGLGYIGKYSPNVRWILLGYVGETDAGLLE 468

Query: 60  VLGGCPKLRKLEIRDCP-FGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLN 118
              GCP L+KLE+R C  F   AL     +  S+R LW+     + +G  LLA   P  N
Sbjct: 469 FSKGCPSLQKLEMRGCSFFSEHALAVAATRLTSLRYLWVQGYGASASGHDLLAMARPYWN 528

Query: 119 VEVM-KEEWSDDSQADK----------VYVYRSVAGPRRDAPPSVLTLS 156
           +EV+       ++Q D+          +  Y S+AGPR D P +V  L 
Sbjct: 529 IEVIPSRRMVVNNQQDRRPVVIEHPAHILAYYSLAGPRADCPDTVRPLH 577


>IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing
           subtype chr08_pseudomolecule_IMGAG_V3 14712347-14710032
           H EGN_Mt090430 20090702
          Length = 557

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 12/153 (7%)

Query: 11  VVKTCNKLQRLSV---SGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLGGCPKL 67
           +++ C KL+R ++   SG LTD   EYIGR+  NL+ + + + G +D G+     GC  L
Sbjct: 404 LLQGCVKLRRFALYLRSGGLTDKDLEYIGRFGVNLKWILLGYCGQTDKGLLDFSQGCRSL 463

Query: 68  RKLEIRDCPFGNAALLSGLEKY--ESMRSLWMSSCKVTM---NGCRLLAREMPRLNVEVM 122
           +KLEIR C F +  +L G+  Y  +S+R LW+ S   +    +G R  AR  P    E++
Sbjct: 464 QKLEIRGCKFFSEVVL-GVAAYNLKSLRYLWVQSYSPSFPPGSGFRFSAR--PYWFTEMI 520

Query: 123 KEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTL 155
                +D+     Y Y  + GPR D P +  T+
Sbjct: 521 STSQDEDNNQFLGY-YSILGGPRADIPHTFCTI 552


>IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing
           subtype chr03_pseudomolecule_IMGAG_V3 22073407-22070105
           E EGN_Mt090430 20090702
          Length = 601

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 3   PWMRSFGAVVKTCNKLQRLSV---SGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQC 59
           P      A++  C+KL R ++    G LTD+   YIG++++N+  + + + G +D G+  
Sbjct: 425 PLDNGVRALLMGCDKLVRFALYLRRGGLTDVGLGYIGQHSQNVRWMLLGYVGETDTGLLE 484

Query: 60  VLGGCPKLRKLEIRDCP-FGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLN 118
              GCP L+KLE+R C  F   AL     +  S+R LW+     + +G  LLA   P  N
Sbjct: 485 FSNGCPSLQKLEMRGCSFFSEHALAIAATRLTSLRYLWVQGYGASSSGSGLLAMARPFWN 544

Query: 119 VEVM------------KEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTLS 156
           +E++             +E    +    +  Y S+AG R D P SV+ L+
Sbjct: 545 IELIPSRQVAVNNNVNPDEPQVVTHPAHILAYYSLAGLRSDFPNSVVPLN 594