Jatropha Genome Database

JcCB0340941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.10 + phase: 0 
         (105 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g122840.1 Dynein light chain, type 1 chr02_pseudomole...    94   1e-20
IMGA|Medtr6g099400.1 Dynein light chain, type 1 chr06_pseudomole...    94   2e-20
IMGA|Medtr8g119810.1 Dynein light chain, type 1 chr08_pseudomole...    83   4e-17
IMGA|Medtr8g138520.1 Dynein light chain, type 1 chr08_pseudomole...    79   6e-16
IMGA|AC233677_8.1 Dynein light chain, type 1 AC233677.2 49859-51...    76   4e-15
IMGA|AC231360_1.1 Dynein light chain, type 1 AC231360.2 16484-17...    66   4e-12
IMGA|Medtr4g157490.1 Dynein light chain, type 1 chr04_pseudomole...    63   4e-11

>IMGA|Medtr2g122840.1 Dynein light chain, type 1
          chr02_pseudomolecule_IMGAG_V3 29622280-29621741 E
          EGN_Mt090430 20090702
          Length = 91

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 61/89 (68%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKA++ +TDM   MQ  A+  A++ALD++DV +   IA  IKK+FD   G GWQC+V
Sbjct: 1  MLEGKAMIEDTDMPTKMQIQAMAYASEALDLYDVIDCKSIAAHIKKEFDARYGGGWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFR 89
          G+ FG F TH  G FIYF + ++  ++F+
Sbjct: 61 GSSFGCFFTHSKGTFIYFTLETLNFLIFK 89


>IMGA|Medtr6g099400.1 Dynein light chain, type 1
          chr06_pseudomolecule_IMGAG_V3 21939217-21940213 H
          EGN_Mt090430 20090702
          Length = 93

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 62/91 (68%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGK VV ETDM   MQ  A+  A++ALD++DV +   IA +IKK+FD   G  WQC+V
Sbjct: 1  MLEGKGVVEETDMPLKMQIQAMSYASQALDLYDVCDCRSIAGYIKKEFDKNYGSRWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCA 91
          G+ FG F +H  G FIYF++ ++  ++++ A
Sbjct: 61 GSNFGCFFSHTPGTFIYFSLETLKFLIYKGA 91


>IMGA|Medtr8g119810.1 Dynein light chain, type 1
           chr08_pseudomolecule_IMGAG_V3 27255419-27252943 E
           EGN_Mt090430 20090702
          Length = 245

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 50/84 (59%)

Query: 11  TDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTH 70
           +DM   MQ  A   A +  D  +   S  IA  IKK+FD   GP W CIVG  FGSFVTH
Sbjct: 159 SDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGSFVTH 218

Query: 71  YHGCFIYFNIGSIAIMLFRCAVNQ 94
             GCF+YF++ ++ I+LF+  V +
Sbjct: 219 STGCFLYFSMENLYILLFKTKVKK 242


>IMGA|Medtr8g138520.1 Dynein light chain, type 1
           chr08_pseudomolecule_IMGAG_V3 33510160-33507237 E
           EGN_Mt090430 20090702
          Length = 130

 Score = 78.6 bits (192), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 5   KAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEF 64
           K ++   DML  MQ++A+ +A  A +  +V +  D+A  IKK+FD   GP W CIVG  F
Sbjct: 46  KVIIKSADMLPDMQKEAVDIAVVAFERHNVEK--DVAETIKKEFDKRHGPTWHCIVGRNF 103

Query: 65  GSFVTHYHGCFIYFNIGSIAIMLFRC 90
           GS+VTH    F+YF +   A++LF+ 
Sbjct: 104 GSYVTHETNHFVYFYLDQKAVLLFKS 129


>IMGA|AC233677_8.1 Dynein light chain, type 1 AC233677.2 49859-51597
           E EGN_Mt090430 20090702
          Length = 307

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 12  DMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTHY 71
           DM   MQ  A+  A KA D  +   S  +A  +KK+FD + GP W CIVGT FGSFVTH 
Sbjct: 222 DMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHS 281

Query: 72  HGCFIYFNI-GSIAIMLFRCAVNQVD 96
            G F+YF++   + I++F+ AV + D
Sbjct: 282 VGGFLYFSMDQKLYILIFKTAVQKAD 307


>IMGA|AC231360_1.1 Dynein light chain, type 1 AC231360.2
          16484-17763 H EGN_Mt090430 20090702
          Length = 70

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 44 IKKDFDMLRGPGWQCIVGTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVNQ 94
          I K+FD   GP W CIVG  FGSFVTH  GCF+YF++ ++ I+LF+  V +
Sbjct: 17 IHKEFDKAYGPAWHCIVGPSFGSFVTHSTGCFLYFSMENLYILLFKTKVKK 67


>IMGA|Medtr4g157490.1 Dynein light chain, type 1
          chr04_pseudomolecule_IMGAG_V3 39268122-39267657 H
          EGN_Mt090430 20090702
          Length = 59

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%)

Query: 47 DFDMLRGPGWQCIVGTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVNQVDEA 98
          +FD   GP W CIVGT FGS+VTH  G F+YF+I  + I+LF+  V  +D +
Sbjct: 8  EFDSTYGPAWHCIVGTSFGSYVTHSVGGFLYFSIDKVHILLFKTTVEPLDHS 59