Jatropha Genome Database

JcCB0340161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340161.10 - phase: 0 
         (89 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g139150.1 DNA-directed DNA polymerase B chr07_pseudom...   105   4e-24

>IMGA|Medtr7g139150.1 DNA-directed DNA polymerase B
          chr07_pseudomolecule_IMGAG_V3 33216582-33210461 H
          EGN_Mt090430 20090702
          Length = 1059

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 56/64 (87%)

Query: 1  MANSRPDSKIFSVRIVSIDYYMAPPIPNTDICYSSFQGGKVNEVPVVRVYGSTPAGQKTC 60
          M++S  +S +FSVRIVS+D+YMA PIP+ DI +S+F  GKVNEVPV+RVYGSTPAGQKTC
Sbjct: 1  MSDSESNSDVFSVRIVSVDHYMASPIPSIDISHSTFHRGKVNEVPVIRVYGSTPAGQKTC 60

Query: 61 LHIH 64
          LHIH
Sbjct: 61 LHIH 64