Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (198 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g149650.1 Protein prenyltransferase chr03_pseudomolec...   151   2e-37

>IMGA|Medtr3g149650.1 Protein prenyltransferase
           chr03_pseudomolecule_IMGAG_V3 39190422-39194998 E
           EGN_Mt090430 20090702
          Length = 686

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 3/158 (1%)

Query: 3   SNHLSIKNEHEPAATTWQLKIIAE*VENFRELSDCKIGKLTLARLLTAHDSLMSCNELV- 61
           SN     + H P  + W ++ I E + NF++LSDCKI KLTLARLL A D L   ++   
Sbjct: 403 SNPAVSADHHIPTTSNWCMEAIDEEITNFQDLSDCKIRKLTLARLLIALDLLSPQHDKRK 462

Query: 62  -HSEEVLRLYSDSMKLDPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTSPSHAY 120
            H+EEVL+LY++ MKLDP+HS YYKD+  L+L   + S RES++  C +YKD +  + +Y
Sbjct: 463 NHTEEVLKLYTELMKLDPTHSLYYKDEHSLLLLQQITSSRESLIPYCHYYKDASETNTSY 522

Query: 121 PMCLRLNKLSLSRIGSVEKLLWVQMPDLSQNELQSIEG 158
            +CLRL  LSLSR+GS E LLWVQM DLS NEL+SIEG
Sbjct: 523 -VCLRLQNLSLSRMGSFENLLWVQMLDLSHNELRSIEG 559