Jatropha Genome Database

JcCB0337681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337681.10 + phase: 0 /partial
         (77 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g108040.1 Sucrose synthase chr01_pseudomolecule_IMGAG...   110   1e-25
IMGA|Medtr8g133160.1 Sucrose synthase chr08_pseudomolecule_IMGAG...    72   8e-14

>IMGA|Medtr1g108040.1 Sucrose synthase
          chr01_pseudomolecule_IMGAG_V3 22924121-22930296 H
          EGN_Mt090430 20090702
          Length = 812

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 4  PKLGRIPSMRERVEDTLSAHRNELVSLLCRYVDQGKGILQPHTLIDELDSVVGEDGTRLG 63
          PKL R+PS+R+RVE TLSAHRNELVSLL RYVDQGKGILQPH LIDEL+S+ GE      
Sbjct: 5  PKLVRLPSIRDRVEGTLSAHRNELVSLLSRYVDQGKGILQPHNLIDELESIHGEGQATED 64

Query: 64 LRDGPFGEALKSAQ 77
          L++GPFGE +KSAQ
Sbjct: 65 LKNGPFGEIIKSAQ 78


>IMGA|Medtr8g133160.1 Sucrose synthase
          chr08_pseudomolecule_IMGAG_V3 31624910-31619828 E
          EGN_Mt090430 20090702
          Length = 805

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 54/77 (70%), Gaps = 2/77 (2%)

Query: 1  MANPKLGRIPSMRERVEDTLSAHRNELVSLLCRYVDQGKGILQPHTLIDELDSVVGEDGT 60
          MA  +L R+ S++ER+++TL+A+RNE+++LL R   +GKGILQ H +I E + +   + +
Sbjct: 1  MATERLTRVHSLKERLDETLTANRNEILALLSRLEAKGKGILQHHQVIAEFEEI--PEDS 58

Query: 61 RLGLRDGPFGEALKSAQ 77
          R  L DG FGE L+S Q
Sbjct: 59 RQKLTDGAFGEVLRSTQ 75