Jatropha Genome Database

JcCB0337211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337211.10 - phase: 0 
         (174 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g108160.1 Carbonic anhydrase, eukaryotic chr07_pseudo...   166   4e-42

>IMGA|Medtr7g108160.1 Carbonic anhydrase, eukaryotic
           chr07_pseudomolecule_IMGAG_V3 25409160-25410839 E
           EGN_Mt090430 20090702
          Length = 270

 Score =  166 bits (421), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 113/174 (64%), Gaps = 5/174 (2%)

Query: 1   MQLEWENGAGTIEINGTEYVLRQCHWHSPSEHTIDGGRFALELHMVHESQDGKVAVVGIM 60
           + L+W+  AG + +NGT Y L QCHWH+PSEHT++G +F +E H VH++   ++AV+GI 
Sbjct: 99  VMLQWKGYAGKLNLNGTYYKLIQCHWHTPSEHTLNGSKFDMEQHCVHQNSKDEIAVIGIW 158

Query: 61  YIIGRPDSFLSSLTEKLRXXXXXXXXXXXXXXXNPKDI-KIGSRKYYRYIGSLTVPPCTE 119
           Y IGRPD  LS L   ++               NP DI K G  KYYRYIGSLT PPCTE
Sbjct: 159 YKIGRPDPLLSKLLNHIK---SIRDKEIDVGIINPADIFKFGGTKYYRYIGSLTSPPCTE 215

Query: 120 NVVWTISRKVRTVTKEQVELLRVAVHDEADTNARPLQPTNGRSVQLYRPEEYKE 173
           +V+WT+ +KV+TV+ EQ++ L+ AV+   + NARP Q  +GR V  Y P + K+
Sbjct: 216 DVIWTVLKKVKTVSVEQLKALK-AVNHGFEENARPTQDLDGRKVWFYNPRKEKK 268