Jatropha Genome Database

JcCB0337131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337131.10 - phase: 0 /partial
         (255 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g090120.1 FAS1 chr07_pseudomolecule_IMGAG_V3 20032677...   245   2e-65

>IMGA|Medtr7g090120.1 FAS1 chr07_pseudomolecule_IMGAG_V3
           20032677-20026683 E EGN_Mt090430 20090702
          Length = 685

 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/227 (55%), Positives = 164/227 (72%), Gaps = 3/227 (1%)

Query: 1   GVQVDRMETELSVEKARGSPSSKQDSESEEFCKLLQQQKYLNNVTETALRKNQPLIILNL 60
           G Q+DRMET++ +E+   S  SK D E+EEFC LL+QQKYLNN+TE ALRKN P+II N 
Sbjct: 431 GAQLDRMETDVGLEEVDSSSCSKDDIETEEFCALLRQQKYLNNLTEHALRKNNPVIIANF 490

Query: 61  MHEKVPLFVAEDLTGTSKLEWTCLEALRVRKFPGGP--SMEISTVDIQAEAREACVSNGK 118
           +++K    +   + GT K E  CL+ALR+   PGG    +E+ST  +Q E +EA  S GK
Sbjct: 491 VYDKELSLLDHSINGTPKQEQMCLQALRMYTIPGGSYIELELSTDKMQEEDQEASPSTGK 550

Query: 119 TNSTHVSPAAAIPELDMPIVVSTIQSCSQSINKVVDSLQQKFPTVSKSQLRNKVREISDF 178
             +T +   AAIP+ D+PI+V+TIQ+CSQ INKV+ SLQQKFP+ SKS LR KVRE+SD+
Sbjct: 551 GAATPLPDLAAIPDTDLPIIVTTIQNCSQGINKVLGSLQQKFPSASKSSLRIKVREVSDY 610

Query: 179 VDNRWQVKKEVLNEVGISISPPGKSRGRMPNISTFFSKRCLPPTGKS 225
           VDNRWQVKKEVL ++G+++    KS G   +I+ FFSKRCLPP G+S
Sbjct: 611 VDNRWQVKKEVLAKLGLTVKSE-KSSGGPRSIAAFFSKRCLPPGGES 656