Jatropha Genome Database

JcCB0334901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.20 - phase: 1 /partial
         (73 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025650.1 RNA-binding region RNP-1 (RNA recognition m...    95   7e-21

>IMGA|Medtr8g025650.1 RNA-binding region RNP-1 (RNA recognition
           motif) chr08_pseudomolecule_IMGAG_V3 5261567-5257902 E
           EGN_Mt090430 20090702
          Length = 392

 Score = 95.1 bits (235), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 54/69 (78%), Gaps = 6/69 (8%)

Query: 6   GLSATDLLTYERQLAMGKMGGVH-ALMHPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVA 64
           GLSATD+L YERQLAM KMGGVH ALMHPQ QH LKQ          SQAIYDGGFQ+VA
Sbjct: 329 GLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQ-----AAIGASQAIYDGGFQNVA 383

Query: 65  AAQQLMYYQ 73
           AAQQ+MYYQ
Sbjct: 384 AAQQMMYYQ 392