Jatropha Genome Database

JcCB0334901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.10 + phase: 0 /pseudo/partial
         (209 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025640.1 hypothetical protein chr08_pseudomolecule_I...   103   8e-23

>IMGA|Medtr8g025640.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 5253076-5256352 E
           EGN_Mt090430 20090702
          Length = 333

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 69/87 (79%), Gaps = 3/87 (3%)

Query: 69  LSSAPLLEPVGSRIQDNEVIVDPRKQQLIARLKTGKNFLRNQDPEKALAEFKAALDLAQS 128
           LS AP+    G RI ++E+IVDP+KQ+LI++LK+GKNFLRNQ P++A  EFK AL+LAQ+
Sbjct: 163 LSYAPI---GGGRIAESEIIVDPKKQELISKLKSGKNFLRNQQPDRAFTEFKTALELAQN 219

Query: 129 MKDPIEEKKAARGLGASLQRQGKYQEA 155
           +KDPIEEKKAARGL A  +   K +E+
Sbjct: 220 IKDPIEEKKAARGLEAFKELHCKDKES 246