Jatropha Genome Database

JcCB0331671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0331671.10 - phase: 0 /partial
         (94 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...   166   4e-42
IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanas...    92   4e-20

>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score =  166 bits (419), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 82/91 (90%)

Query: 4   NETSCGNTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGNP 63
           N + CGNTFNCNHP+VR+FI+DCLRYWV EMHVDGFRFDLASIMTR SSLW+ VNVFG P
Sbjct: 377 NYSGCGNTFNCNHPVVRKFIVDCLRYWVTEMHVDGFRFDLASIMTRSSSLWNGVNVFGAP 436

Query: 64  VEGDLLTTGTPLSSPPLIDMISNDPILREVK 94
           +EGD LTTGTPLSSPPLIDMIS DPILR VK
Sbjct: 437 IEGDFLTTGTPLSSPPLIDMISIDPILRGVK 467


>IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanase,
           type I; ; ; chr03_pseudomolecule_IMGAG_V3
           39571747-39562313 E EGN_Mt090430 20090702
          Length = 672

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 55/92 (59%), Gaps = 19/92 (20%)

Query: 3   LNETSCGNTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGN 62
           LN + CGNT NCNHP+V   ILD LR+WV E HVDGFRFDLASI+ RG            
Sbjct: 419 LNFSGCGNTLNCNHPVVMDLILDSLRHWVTEYHVDGFRFDLASILCRG------------ 466

Query: 63  PVEGDLLTTGTPLSSPPLIDMISNDPILREVK 94
                  T G+PL++PPLI  I+ D +L   K
Sbjct: 467 -------TDGSPLNAPPLIRAIAKDAVLSRCK 491