Jatropha Genome Database

JcCB0329751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329751.10 - phase: 0 /pseudo
         (163 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g134990.1 Cellulose synthase chr04_pseudomolecule_IMG...   130   3e-31
IMGA|Medtr4g089980.1 Cellulose synthase A catalytic subunit 4, p...    72   1e-13
IMGA|Medtr4g089800.1 Cellulose synthase chr04_pseudomolecule_IMG...    70   6e-13
IMGA|Medtr8g145000.1 Zinc finger, RING-type; Cellulose synthase ...    66   9e-12
IMGA|Medtr3g009020.1 Cellulose synthase chr03_pseudomolecule_IMG...    65   1e-11
IMGA|Medtr4g141680.1 Zinc finger, RING-type; Cellulose synthase ...    64   3e-11
IMGA|Medtr3g029130.1 Zinc finger, RING-type; Cellulose synthase ...    64   3e-11
IMGA|Medtr3g136720.1 Zinc finger, RING-type; Cellulose synthase ...    64   3e-11
IMGA|Medtr1g124990.1 Zinc finger, RING-type; Cellulose synthase ...    61   2e-10
IMGA|Medtr8g073590.1 Zinc finger, RING-type; Cellulose synthase ...    57   3e-09

>IMGA|Medtr4g134990.1 Cellulose synthase
           chr04_pseudomolecule_IMGAG_V3 32654448-32648144 E
           EGN_Mt090430 20090702
          Length = 991

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 89/129 (68%), Gaps = 12/129 (9%)

Query: 1   MMESGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPYDE 60
           MM SG  +C+ CGEQ+ L  NGE FVACH+C++P+CK+CFE+EI E  KVCL+CG+PY+ 
Sbjct: 1   MMPSGASLCNICGEQLVLSENGELFVACHECSYPICKACFEHEINEGHKVCLKCGTPYEG 60

Query: 61  NLLDDGEAKASG----------NRSTMASQLNNSQD-VGIHARHVSSVSTVD-SEMNDEY 108
              +D                 N STMASQ+NNS+D  G+HARH+S+VS++D  E+N+E 
Sbjct: 61  RTNNDNVDDEREDDDDDIMVHENPSTMASQINNSEDGGGLHARHISTVSSLDIEEVNEES 120

Query: 109 GNPIWKNRV 117
           GN  WKNR+
Sbjct: 121 GNSKWKNRM 129


>IMGA|Medtr4g089980.1 Cellulose synthase A catalytic subunit 4,
           putative chr04_pseudomolecule_IMGAG_V3 18885025-18883512
           E EGN_Mt090430 20090702
          Length = 244

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 4   SGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPYDEN-- 61
           S   IC  CG+++G   NGE FVACH C FP+CK C+EYE  E  + C +C S Y  +  
Sbjct: 27  SSSKICRVCGDEIGYKENGELFVACHVCAFPVCKPCYEYERSEGNQCCPQCNSRYKRHKG 86

Query: 62  ---LLDDGEAKASGNRSTMASQLNNSQDVGIHARHVSSVSTVD----------------- 101
              ++ D +    G+       + N  D     R V+ V +VD                 
Sbjct: 87  CPRVVGDEDENLDGDDFEDEFPVKNHHDDLDQNRDVNHVESVDYNQQKLHTFSSAGSVTG 146

Query: 102 SEMNDE---YGNPIWKNRVESWK 121
            ++  E   Y N  W+ RVE WK
Sbjct: 147 KDLEGEKEFYSNEEWQERVEKWK 169


>IMGA|Medtr4g089800.1 Cellulose synthase
           chr04_pseudomolecule_IMGAG_V3 18805888-18800122 E
           EGN_Mt090430 20090702
          Length = 1039

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 25/139 (17%)

Query: 8   ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY--------- 58
           IC  CG+++G   NGE FVACH C FP+CK C+EYE  E  + C +C S Y         
Sbjct: 31  ICRVCGDEIGYKENGELFVACHVCAFPVCKPCYEYERSEGNQCCPQCNSRYKRHKGCPRV 90

Query: 59  ----DENL-----LDDGEAKASGNRSTMASQLNNSQDVGIHARHVSSVSTVDSEMNDE-- 107
               DENL      D+   K   +       +N+ + V  + + + + S+  S    +  
Sbjct: 91  VGDEDENLDGDDFEDEFPVKNHHDDLDQNRDVNHVESVDYNQQKLHTFSSAGSVTGKDLE 150

Query: 108 -----YGNPIWKNRVESWK 121
                Y N  W+ RVE WK
Sbjct: 151 GEKEFYSNEEWQERVEKWK 169


>IMGA|Medtr8g145000.1 Zinc finger, RING-type; Cellulose synthase
          chr08_pseudomolecule_IMGAG_V3 35160848-35155901 E
          EGN_Mt090430 20090702
          Length = 1038

 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 38/51 (74%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          +C  CG+ VGL  +G+ FVAC++C FP+C+ C+EYE +E R++C +C + Y
Sbjct: 36 VCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRY 86


>IMGA|Medtr3g009020.1 Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 1240220-1233020 E
          EGN_Mt090430 20090702
          Length = 1048

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 38/50 (76%)

Query: 9  CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          C  CGE +G+  +G+PFVAC++C FP+C++C+EYE +E  +VC +C + +
Sbjct: 39 CQLCGEDIGVNADGDPFVACNECAFPVCRNCYEYERREGNQVCPQCKTKF 88


>IMGA|Medtr4g141680.1 Zinc finger, RING-type; Cellulose synthase
          chr04_pseudomolecule_IMGAG_V3 35036331-35029774 E
          EGN_Mt090430 20090702
          Length = 1098

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          IC  CG+++ +  +GEPFVAC++C FP+C+ C+EYE KE  + C +C + Y
Sbjct: 38 ICMICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERKEGNQACPQCKTRY 88


>IMGA|Medtr3g029130.1 Zinc finger, RING-type; Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 7596650-7605565 E
          EGN_Mt090430 20090702
          Length = 1078

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 1  MMESGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPYDE 60
          M   G  +C  CG+ +G   NG+PF+AC  C FP+C+ C+EYE K+  + C +C + Y++
Sbjct: 13 MKTLGSKVCQICGDNIGSAVNGDPFIACGVCAFPVCRPCYEYERKDGNQSCPQCKTRYNK 72

Query: 61 NLLDDGEAKASGNRSTMASQLNNSQD 86
          +    G     G+R       N++ D
Sbjct: 73 H---KGSPAILGDREEDGGADNDAND 95


>IMGA|Medtr3g136720.1 Zinc finger, RING-type; Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 34568485-34575037 E
          EGN_Mt090430 20090702
          Length = 1087

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          +CH CGE VG    G+ FVAC++C +P+C+ C+EYE KE  K C +C + Y
Sbjct: 39 VCHICGEDVGTTPTGDVFVACNECGYPVCRDCYEYERKEGNKSCPQCKTRY 89


>IMGA|Medtr1g124990.1 Zinc finger, RING-type; Cellulose synthase
          chr01_pseudomolecule_IMGAG_V3 27423658-27418351 E
          EGN_Mt090430 20090702
          Length = 1135

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          IC  CG+++    + EPFVAC++C FP+C+ C+EYE +E  + C  C + Y
Sbjct: 40 ICQICGDEIEFTVDDEPFVACNECAFPVCRPCYEYERREGNQACPHCKTKY 90


>IMGA|Medtr8g073590.1 Zinc finger, RING-type; Cellulose synthase
          chr08_pseudomolecule_IMGAG_V3 14394817-14400736 E
          EGN_Mt090430 20090702
          Length = 981

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 9  CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          C  CG+ VG    G+ FVAC +C FP+C+ C+EYE KE  + C +C + Y
Sbjct: 37 CEICGDSVGRTVEGDLFVACEECGFPVCRPCYEYERKEGSQNCPQCHTRY 86