Jatropha Genome Database

JcCB0329631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329631.10 + phase: 2 /pseudo/partial
         (249 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g165700.2 Aspartate carbamoyltransferase chr04_pseudo...   246   6e-66
IMGA|Medtr4g165700.1 Aspartate carbamoyltransferase chr04_pseudo...   246   7e-66
IMGA|Medtr5g101000.1 Aspartate carbamoyltransferase chr05_pseudo...   244   3e-65

>IMGA|Medtr4g165700.2 Aspartate carbamoyltransferase
           chr04_pseudomolecule_IMGAG_V3 41793858-41790366 E
           EGN_Mt090430 20090702
          Length = 325

 Score =  246 bits (629), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 131/139 (94%)

Query: 111 SIQLSLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVTWEESADLIEVASKCDVVYQTRI 170
           S+   LAKY+DVKIYFVSP+VVKMKDDIKDYLTSKGV WEES+DL+EVAS+CDVVYQTRI
Sbjct: 187 SLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSKGVDWEESSDLVEVASECDVVYQTRI 246

Query: 171 QRERFGERIDLYEEARGKYIVDRDVLNVMQKHAVVMHPLPRLDEITIDVDADPRGAYFRQ 230
           Q+ERFGER+DLYE+ARGKYIV++++L  MQ+HAVVMHPLPRLDEIT+DVDADPR AYFRQ
Sbjct: 247 QKERFGERLDLYEKARGKYIVNQNILKAMQRHAVVMHPLPRLDEITVDVDADPRAAYFRQ 306

Query: 231 AKNGLYIRMALLKLLLVGW 249
           AK GLYIRMA+LKLLLVGW
Sbjct: 307 AKYGLYIRMAILKLLLVGW 325


>IMGA|Medtr4g165700.1 Aspartate carbamoyltransferase
           chr04_pseudomolecule_IMGAG_V3 41793858-41790366 E
           EGN_Mt090430 20090702
          Length = 380

 Score =  246 bits (628), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 131/139 (94%)

Query: 111 SIQLSLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVTWEESADLIEVASKCDVVYQTRI 170
           S+   LAKY+DVKIYFVSP+VVKMKDDIKDYLTSKGV WEES+DL+EVAS+CDVVYQTRI
Sbjct: 242 SLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSKGVDWEESSDLVEVASECDVVYQTRI 301

Query: 171 QRERFGERIDLYEEARGKYIVDRDVLNVMQKHAVVMHPLPRLDEITIDVDADPRGAYFRQ 230
           Q+ERFGER+DLYE+ARGKYIV++++L  MQ+HAVVMHPLPRLDEIT+DVDADPR AYFRQ
Sbjct: 302 QKERFGERLDLYEKARGKYIVNQNILKAMQRHAVVMHPLPRLDEITVDVDADPRAAYFRQ 361

Query: 231 AKNGLYIRMALLKLLLVGW 249
           AK GLYIRMA+LKLLLVGW
Sbjct: 362 AKYGLYIRMAILKLLLVGW 380


>IMGA|Medtr5g101000.1 Aspartate carbamoyltransferase
           chr05_pseudomolecule_IMGAG_V3 40396735-40400400 E
           EGN_Mt090430 20090702
          Length = 384

 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 129/139 (92%)

Query: 111 SIQLSLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVTWEESADLIEVASKCDVVYQTRI 170
           S+   LAKY DVKIYFVSP VVKMKDDIK+YLTS+GV WEES+DL+EVASKCDVVYQTRI
Sbjct: 246 SLAYLLAKYHDVKIYFVSPNVVKMKDDIKEYLTSEGVEWEESSDLMEVASKCDVVYQTRI 305

Query: 171 QRERFGERIDLYEEARGKYIVDRDVLNVMQKHAVVMHPLPRLDEITIDVDADPRGAYFRQ 230
           Q+ERFG++I+LYEEARGKYIV++DVL VMQ HAVVMHPLPRLDEI ++VD+DPR AYFRQ
Sbjct: 306 QKERFGDKINLYEEARGKYIVNQDVLKVMQNHAVVMHPLPRLDEIEVEVDSDPRAAYFRQ 365

Query: 231 AKNGLYIRMALLKLLLVGW 249
           AKNGLYIRMALLK+LL+GW
Sbjct: 366 AKNGLYIRMALLKVLLLGW 384