Jatropha Genome Database
- JcCB0329531.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0329531.10 + phase: 2 /TE/partial
(839 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 216 4e-56
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 214 2e-55
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 205 6e-53
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 198 1e-50
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 149 7e-36
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 147 2e-35
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 138 1e-32
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 135 1e-31
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 127 3e-29
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 111 1e-24
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 100 4e-21
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 79 1e-14
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 75 2e-13
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 73 7e-13
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 63 5e-10
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 62 1e-09
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 60 4e-09
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 59 1e-08
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 57 3e-08
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 57 3e-08
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 57 4e-08
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 56 7e-08
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 50 4e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/392 (34%), Positives = 211/392 (53%), Gaps = 2/392 (0%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G + E+VY+ PP + KP+ V KL ++LYGLKQA R YE+L+ L++ ++ +
Sbjct: 852 FLHGELQEDVYMILPPGI-NIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQA 910
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
LFIK + ++ VYVDDII T+ L +N I+ FK+ +G+L +FLG+
Sbjct: 911 SSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGI 970
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
++ IS+ Q KY +LL +K ST S KL D + DI ++ ++
Sbjct: 971 EVAHSKLGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLV 1030
Query: 613 GSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDL 672
G LLYL TRPDI F ++F S+P +H R LRYL L + +N + L
Sbjct: 1031 GRLLYLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTL 1090
Query: 673 IGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVL 732
G+SD D+ G R S + FL N+LI W KK T V+ S ++AEY A S ++
Sbjct: 1091 QGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQ 1150
Query: 733 CIKQQIADNGLKLEMIPI-KCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMV 791
+ + D + P+ CDN SA+++ N + H +TKH+E+ H + + + G + +
Sbjct: 1151 WLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKL 1210
Query: 792 EFILIEKQLADIFTKSLNESQFCLIRRELGML 823
+ + Q+AD FTK+L F L+ +LG++
Sbjct: 1211 LPVSSQDQIADFFTKALLPKTFSLLLSKLGLI 1242
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 211/392 (53%), Gaps = 2/392 (0%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G + E+VY+ PP +S K N V KLT++LYGLKQA R YE+L+ L + ++++
Sbjct: 1006 FLHGDLQEDVYMMVPPGIKS-SKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQA 1064
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
LF+K + V+ VYVDDII + + I+ FK+ +G+L +FLG+
Sbjct: 1065 TSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGI 1124
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
++ IS+ Q KY +LL +K ST +S+KL D + D+ + ++
Sbjct: 1125 EVAHSKLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLV 1184
Query: 613 GSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDL 672
G LLYL TRPDI F ++F S P ++H R+L+YL L + ++ + +L
Sbjct: 1185 GRLLYLNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNL 1244
Query: 673 IGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVL 732
G+SD D+ G R S S FL N+LI W KK V+ S ++AEY A S ++
Sbjct: 1245 QGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQ 1304
Query: 733 CIKQQIADNGLKLEMIPI-KCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMV 791
I + D +P+ CDN SAI++ N + H +TKH+E+ H I D + G + +
Sbjct: 1305 WILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKL 1364
Query: 792 EFILIEKQLADIFTKSLNESQFCLIRRELGML 823
+ + Q+AD FTK+L F ++ +LG++
Sbjct: 1365 LTVSSQDQVADFFTKALLPKPFNILLSKLGLI 1396
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 201/382 (52%), Gaps = 2/382 (0%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G + E VY+ PP S + N V KL ++LYGLKQA R Y++L+ LL++ +++
Sbjct: 980 FLHGDLQENVYMTLPPGI-SAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQA 1038
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
LF K ++ VYVDDII + + I+ FK+ +G+L FFLGL
Sbjct: 1039 HSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGL 1098
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
++ IS+ Q KY +LL +K ST SLKL KD DI ++ +I
Sbjct: 1099 EVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLI 1158
Query: 613 GSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDL 672
G LLYL TRPDI + ++F S+P +H R+LRYL L + +N L
Sbjct: 1159 GRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQL 1218
Query: 673 IGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVL 732
GYSD D+ G R S S FL N+LI W KK V+ S ++AEY A S ++
Sbjct: 1219 QGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQ 1278
Query: 733 CIKQQIADNGLKLEMIPIK-CDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMV 791
+ + D + +P+ CDN SA+++ N + H +TKH+E+ H + + + G + +
Sbjct: 1279 WLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKL 1338
Query: 792 EFILIEKQLADIFTKSLNESQF 813
+ ++Q+AD FTKSL+ F
Sbjct: 1339 LPVSSKEQVADFFTKSLHPQPF 1360
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 205/394 (52%), Gaps = 6/394 (1%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G + E+VY+ P K N V KL ++LYGLKQA R YE+L+ L+ +++ +
Sbjct: 997 FLHGDLQEDVYMIVPQGITP-SKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQS 1055
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
LFIK + VYVDD+I T+ ++ I+ ++ +G+L +FLGL
Sbjct: 1056 TSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGL 1115
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
++ IS+ Q KY +LL K ST S KL D DI ++ +I
Sbjct: 1116 EVAHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLI 1175
Query: 613 GSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDL 672
G L+YLT TRP I F+ ++F +SP E H I RILRYL + L + ++ + L
Sbjct: 1176 GRLIYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFL 1235
Query: 673 IGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMA--ARSCVAQ 730
GYSD D+ G R S S FL ++LI W KK V+ S ++AEY A A +C Q
Sbjct: 1236 SGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQ 1295
Query: 731 -VLCIKQQIADNGLKLEMIPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDI 789
+L + + +KL + + CDN SA+++ N + H +TKH+E+ H + + + +
Sbjct: 1296 WLLYLLHDLHVTTVKLHV--LYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIM 1353
Query: 790 MVEFILIEKQLADIFTKSLNESQFCLIRRELGML 823
+ + QLAD FTK L F + +LGML
Sbjct: 1354 KLLPVTSADQLADFFTKPLLPQPFHTLLFKLGML 1387
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 15/316 (4%)
Query: 508 LVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGLQIKQCDDRISINQGK 567
+ V +YVDD++ + NF + ++ F M +G L +FLGL++ + + + + Q K
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRK 60
Query: 568 YAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHF 627
Y ++L + KM + K + M + KL D+ D ++ +I L+YLT P+I +
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITY 120
Query: 628 SVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDR 687
SV H++ M R+LRYL + + K + L+ Y D D+ + R
Sbjct: 121 SV-------------HILTM-RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTR 166
Query: 688 NSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEM 747
STS L +A I W KK + V+ S ++AEY A V++V+ ++ ++ + +
Sbjct: 167 RSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDS 226
Query: 748 IPI-KCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTK 806
+ CDN +A++L N + H +TKHIE+ H I H+ +G I ++ +KQ ADIFTK
Sbjct: 227 PTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTK 286
Query: 807 SLNESQFCLIRRELGM 822
+L QF + +LG+
Sbjct: 287 ALGAKQFQELTFKLGV 302
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 171/356 (48%), Gaps = 35/356 (9%)
Query: 469 LKQAPRAXYERLSKFLLENYFSRGKVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXK 528
++ A R YE+L+ L+ + + + LFIK+ + VYVDDII N+L
Sbjct: 382 IRLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAG-NSLDEF 440
Query: 529 NFSK-IMQGXFKMSMMGELNFFLGLQIKQCDDRISINQGKYAQELLKKFKMENTKVCSTT 587
F K I+ FK+ +G+L +FLGL++ IS+ Q KY +LL + ++K +T
Sbjct: 441 TFIKNILHNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATP 500
Query: 588 MSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVM 647
S+KL D++ DI ++ ++G LLYL TRPDI F ++F S P ++H
Sbjct: 501 SDPSIKLYHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAA 560
Query: 648 KRILRYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGK 707
R+LRYL L + ++ + GYSD D+ G R S S FL ++LI W K
Sbjct: 561 LRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTK 620
Query: 708 KXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEMIPIKCDNTSAINLIKNLIQH 767
K V+ S ++AEY A + + N + H
Sbjct: 621 KQLTVSRSSSEAEYRALGAATS---------------------------------NPVFH 647
Query: 768 SKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKSLNESQFCLIRRELGML 823
+TKH+E+ H + + + G + + I + QLAD FTKS+ F + +LG++
Sbjct: 648 ERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLV 703
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 133/258 (51%), Gaps = 1/258 (0%)
Query: 498 LFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGLQIKQC 557
+F K+ ++ VYVDDII + ++ I+ FK+ +G+L + LGL++
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 558 DDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLY 617
IS+ Q KY +LL N+K ST+ ASLKL D + DI ++ +IG LLY
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 618 LTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDLIGYSD 677
L TRPDI F ++F S P ++H R+L+YL L + +N + L G+SD
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSD 180
Query: 678 FDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQ 737
D+ G R S S F+ N+LI W KK T V+ S ++AEY A S ++ I
Sbjct: 181 VDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYL 240
Query: 738 IADNGLKLEMIPIK-CDN 754
+ D ++ +P+ CDN
Sbjct: 241 LKDLNIQSSKLPVLFCDN 258
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 162/346 (46%), Gaps = 45/346 (13%)
Query: 451 ESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRGKVSTILFIKNQAPDILVV 510
E ++ V+KL +ALYGLKQAPRA +R+ KF +E F + +++K
Sbjct: 257 EGFDYTEVVFKLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVK--------- 307
Query: 511 QVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGLQIKQCDDRISINQGKYAQ 570
GS L + L+I + + +NQ KY
Sbjct: 308 ---------GSEGTSL---------------------LIICLEILRTTKGLILNQTKYDT 337
Query: 571 ELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHFSVC 630
E+ KKF M + T A+ E E K VD + + +IG L YL +R DI +SV
Sbjct: 338 EIQKKFNMLDFNSSITLAYANNINEVKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVG 397
Query: 631 LCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYS---KNDTFDLIGYSDFDFVGSGVDR 687
+ ++F S+P ++H + K+I+RY+ GT + + + + +I YSD D+ DR
Sbjct: 398 IVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDR 457
Query: 688 NSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEM 747
T+ L A I W KK VALS + EY+ S Q ++ + + +KL+
Sbjct: 458 RRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQ 517
Query: 748 IPIK--CDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMV 791
PIK DN AINL KN I H K+KHIE + H + D V K I +
Sbjct: 518 -PIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQVNKCKINI 562
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 1/239 (0%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G ++EEVY++ PP + K + V KL ++LYGLKQA R YE+L++ L +
Sbjct: 449 FLHGDLHEEVYMDIPPGLATPHK-DLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHS 507
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
LF K + + + VYVDDI+ T+ + + FK+ +G L++FLGL
Sbjct: 508 PHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGL 567
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
++ DD I ++Q K+ +LLK+F ++ S+ + ++KL E D ++ +I
Sbjct: 568 EVLYKDDGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLI 627
Query: 613 GSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFD 671
G L +LT TR D+ + V L +++ P+E HL +LRYL L + S FD
Sbjct: 628 GKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAANFD 686
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 1/195 (0%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G + E+VY+ PP + + V KL ++LYGL+QA YE+L+ L+ + +
Sbjct: 98 FLHGELQEDVYMIIPPGV-PHSHQDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQA 156
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
LFIK+ ++ VYVDD+I ++ FK+ +G+L +FLGL
Sbjct: 157 ASDASLFIKHTHSSFTILLVYVDDVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGL 216
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
++ IS+ Q KY +LL+ + +K +T S+KL D DI ++ +I
Sbjct: 217 EVAHSKSGISLCQRKYCLDLLEDSGLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLI 276
Query: 613 GSLLYLTGTRPDIHF 627
G LLYL TRPDI +
Sbjct: 277 GRLLYLNTTRPDITY 291
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 150/355 (42%), Gaps = 64/355 (18%)
Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
FL+G + E+VY+ PP S +P V KL ++LYGLKQA R +E+L LL F +
Sbjct: 209 FLHGDLQEDVYM-HPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQA 267
Query: 493 KVSTILFIKNQAPDILVVQVYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGL 552
I+ + +YV G
Sbjct: 268 SADHSFLIRASPTSFTALLIYVAHSSKG-------------------------------- 295
Query: 553 QIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSII 612
IS+ Q KY +LL + K ST + + L D+ D+ ++ +I
Sbjct: 296 --------ISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLI 347
Query: 613 GSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDL 672
G LLYLT TRPDI F+ ++F + P +H +LRYL L + + L
Sbjct: 348 GCLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQL 407
Query: 673 IGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVL 732
+G+SD D+ G VD + R+ F + + F + SI+ R+ +A +
Sbjct: 408 LGFSDADW-GGCVD---SRRSLAFQEAIHRFLFFLRSGISCFSISH-----PRTPMAHI- 457
Query: 733 CIKQQIADNGLKLEMIPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKG 787
+L + + CDN SA+++ N + + +TKH+++ H + + V +G
Sbjct: 458 -----------RLSI--LYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQRG 499
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 32/243 (13%)
Query: 512 VYVDDIIFGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGLQIK-QCDDRISINQGKYAQ 570
VYV D+I N L + + F + +G L +FLG+++K Q + + I Q KY +
Sbjct: 3 VYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKYVR 62
Query: 571 ELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHFSVC 630
+LL K M+ K + M + LKL KD + D L +SI+ +L Y P
Sbjct: 63 DLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP------- 115
Query: 631 LCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDL--IGYSDFDFVGSGVDRN 688
+ +LR+L GT + L T+ L + Y D D+ GS D
Sbjct: 116 ----------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADW-GSDPDDR 158
Query: 689 STSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEMI 748
S FL LI W+ KK +A S T+AEY + +++L IK G +L++I
Sbjct: 159 SVDACV-FLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTY----GARLKVI 213
Query: 749 PIK 751
K
Sbjct: 214 QKK 216
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 563 INQGKYAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTR 622
++Q YA E+LKKF M + T A++ E E + VD +F+ +IGSL YL +R
Sbjct: 12 LHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRLIGSLRYLCQSR 71
Query: 623 PDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSN---LDLXYSKNDTFDLIGYSDFD 679
P I + V + +RF S+P +++ + K+ILRY+ T L L + D+ GYSD D
Sbjct: 72 PGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATEQLDMEGYSDAD 131
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 748 IPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKS 807
+ +K DN SAINL KN I H K KH+E R H + D V K +++VE+ + QL D+FTK+
Sbjct: 12 VKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTKA 71
Query: 808 LNESQFCLIRRELGMLILNS 827
L QF +RRE+ ++ +S
Sbjct: 72 LKRDQFLKLRREIRVVNFDS 91
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 459 VYKLTRALYGLKQAPRAXYERLSKFLLENYFSRGKVSTILFIKNQAPDILVVQVYVDDII 518
VY L ++LYGLKQA R Y +LS+ L+E F LF ++ + V +YVDD++
Sbjct: 2 VYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLV 61
Query: 519 FGSTNNLLXKNFSKIMQGXFKMSMMGELNFFLGLQIKQ 556
+ NF + ++ F M +G L +FLGL++ +
Sbjct: 62 IAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELAR 99
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 43/74 (58%)
Query: 444 VEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRGKVSTILFIKNQ 503
+ QP F + PN V KL ++LYGLKQAP+A ++ L KFLL F K T LFI +
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 504 APDILVVQVYVDDI 517
A VYVDDI
Sbjct: 61 ANTFAYFLVYVDDI 74
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 649 RILRYLCGTSNLDLXYSKNDTFDLIGYSDFDF-VGSGVDRNSTSRTYQFLDNALIYWFGK 707
R+L YL G L + + + + GY++ D+ VG R S S
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQ-------------- 47
Query: 708 KXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEMIPI-KCDNTSAINLIKNLIQ 766
F S ++AEY A S ++ + + D + P+ CDN SAI + N +
Sbjct: 48 --CFFCWSSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVF 105
Query: 767 HSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKSLNESQFCLIRRELGMLILN 826
H TKH+E+ H + + + G + I + Q+AD FTKSL F + +LGML
Sbjct: 106 HECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGML--- 162
Query: 827 SXLXNSIYH 835
IYH
Sbjct: 163 -----DIYH 166
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%)
Query: 538 FKMSMMGELNFFLGLQIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMSASLKLEKD 597
F+M + L++FLGL+ +D + ++Q KYA +L+ + + + K+ T + +++
Sbjct: 22 FEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQAGLTDCKIEYTRLEPNIQFTPQ 81
Query: 598 ENGKDVDIKLFKSIIGSLLYLTGTRPDIHFSVCLCA 633
+ D L+ +GSL+YLT TRP+I + V L +
Sbjct: 82 DGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 748 IPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKS 807
+ +K DN S INL KN I H ++KHIE+R H + + V KG + +E E Q+AD+ TK
Sbjct: 116 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKG 175
Query: 808 LNESQFCLIR 817
+ F R
Sbjct: 176 VKIEVFTKPR 185
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Query: 530 FSKIMQGXFKMSMMGELNFFLGLQIKQCDDRISINQGKYAQELLKKFKMENTKVCSTTMS 589
F K M F+M+ +G +++FLG++ + + ++Q +YA ++LKKF +E T
Sbjct: 26 FRKDMMRQFEMTDLGHISYFLGIEFHRRSRDLLMHQRRYAIKILKKFDIEYRNHAVTPAK 85
Query: 590 ASLKLEKDENGKDVDIKLFKSIIGSLLYLTGT-RPDIHFSVCLCARFQSSPKESHLIVMK 648
+L K+ + DVD + +IGS +++ T + D ++ L + + H+ +
Sbjct: 86 TIFQLSKNNDESDVDPTQYGRLIGSQVFIAVTLKIDNISTINLAKNPIAHGRSKHIEMRF 145
Query: 649 RILRYLCGTSNLDLXYSKND 668
LR L L +SK++
Sbjct: 146 HYLREQVSKGKLKLEHSKSE 165
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 578 MENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHFSVCLCARFQS 637
M N T + SL L ++ ++VD F+ +IG L YL TRPD+ S+ L ++F
Sbjct: 1 MGNCNPTLTQVVTSLSLINEQRKENVDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQ 60
Query: 638 SPKESHLIVMKRILRYLCGTSNLDLXYSKND 668
+ SH+I +KR+L Y+ G + +S ND
Sbjct: 61 NLGVSHMIAVKRMLIYIKGKVEHAILFSNND 91
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 748 IPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKS 807
+ +K DN S INL KN I H ++KHIE+R H + + V KG + +E E Q+AD+ TK
Sbjct: 25 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKG 84
Query: 808 LNESQFCLIR 817
+ F R
Sbjct: 85 VKIEVFTKPR 94
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 750 IKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKSLN 809
+K DN S INL KN I ++KHI+ R H I + V K I VE+ E QL D FTK+
Sbjct: 14 LKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPTEVQLGDGFTKAFK 73
Query: 810 ESQFCLIRRELGML 823
+F +R +LG++
Sbjct: 74 IDRFTCLRDKLGLI 87
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 741 NGLKLEMIPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQL 800
N +++ I + DN S I+L + I H +KHIE + H + D V K + +E+ E QL
Sbjct: 18 NAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNKMKLDLEYCNTEVQL 77
Query: 801 ADIFTKSLNESQFCLIRRELGMLILNS 827
A+IFTK L ++ F +++ + M L S
Sbjct: 78 ANIFTKPLKKAMFDELKKLMVMKRLTS 104