Jatropha Genome Database

JcCB0320341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0320341.10 + phase: 0 
         (77 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g023980.1 Plant regulator RWP-RK chr05_pseudomolecule...    89   4e-19

>IMGA|Medtr5g023980.1 Plant regulator RWP-RK
           chr05_pseudomolecule_IMGAG_V3 9497574-9494159 E
           EGN_Mt090430 20090702
          Length = 330

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 54/63 (85%)

Query: 12  EEAERQKQENENAAMAVAKRQKMLEKEKETIERKPFIEIQSETKRFRQDVFKRRHRARAL 71
           EEA+ Q+ E+++AAMAV +RQKMLE EKE IE++PF++IQ ETKRFRQD+FKRRHRAR +
Sbjct: 257 EEAKHQEMEDKDAAMAVIRRQKMLESEKENIEKRPFMDIQIETKRFRQDIFKRRHRARVI 316

Query: 72  RNQ 74
             Q
Sbjct: 317 EKQ 319