Jatropha Genome Database

JcCB0319311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.30 - phase: 2 /TE
         (375 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo...   110   1e-24
IMGA|Medtr5g046390.1 gag-pol polyprotein, related chr05_pseudomo...    96   3e-20
IMGA|Medtr6g086660.1 gag-pol polyprotein, related chr06_pseudomo...    78   7e-15
IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related ...    71   7e-13
IMGA|Medtr1g102740.1 gag-pol polyprotein, related chr01_pseudomo...    70   2e-12
IMGA|Medtr1g102780.1 gag-pol polyprotein, related chr01_pseudomo...    68   6e-12
IMGA|Medtr6g086670.1 gag-pol polyprotein, related chr06_pseudomo...    68   7e-12
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule...    54   9e-08
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H...    51   9e-07
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy...    50   2e-06
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy...    49   3e-06

>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
           chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
           EGN_Mt090430 20090702
          Length = 183

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 79/115 (68%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDVL 252
           WL+DSGCT+HMT +   F  L+ +  SKVR+ +G  ++V+G G V++++ SG K++S+VL
Sbjct: 13  WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYKQISNVL 72

Query: 253 YVPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMKRRSFPLHLRN 307
           Y PKLNQSL SV QLL K Y +LF+ + C I D +  ++   +MK R F L L+N
Sbjct: 73  YAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVLRAQMKARKFVLDLKN 127


>IMGA|Medtr5g046390.1 gag-pol polyprotein, related
           chr05_pseudomolecule_IMGAG_V3 19508075-19507539 H
           EGN_Mt090430 20090702
          Length = 178

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 75/113 (66%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDVL 252
           WL+DSG TN++T +   F  LD +YSS +R+ +G  +  +G G ++ +  SG+K V +VL
Sbjct: 12  WLIDSGATNNLTCDREVFTELDKSYSSVIRVANGAEITSEGIGTIVFKNHSGSKLVLNVL 71

Query: 253 YVPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMKRRSFPLHL 305
           YVP+++++L SV QLL   Y +LF+ + C I+D +  ++F ++MK+  F L L
Sbjct: 72  YVPQISENLLSVPQLLKNGYKVLFEHESCMINDQNNEEVFKIQMKKNRFYLEL 124


>IMGA|Medtr6g086660.1 gag-pol polyprotein, related
           chr06_pseudomolecule_IMGAG_V3 17762174-17761410 H
           EGN_Mt090430 20090702
          Length = 254

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLD-TNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDV 251
           W +DSG T+HMT +   F  L+ T  S  + +G+G  ++V+G G V I+  SG K + +V
Sbjct: 13  WYIDSGATHHMTYDRSLFKELNKTIISCNIIVGNGAPIEVEGFGTVTIKHHSGLKLILNV 72

Query: 252 LYVPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMKRRSFPL 303
            YVPKL  SL SV QLL++ Y + F    CEI   +  ++  ++M+ + F L
Sbjct: 73  FYVPKLTSSLLSVPQLLEEGYHVFFIHNSCEIKHQNNKEVIKIQMESKKFVL 124


>IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related
           chr05_pseudomolecule_IMGAG_V3 21011474-21012209 E
           EGN_Mt090430 20090702
          Length = 210

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 191 ETWLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSD 250
           E+W++DSG +NHMT  L   + +       V L + R      +G V +   +   R+ +
Sbjct: 34  ESWILDSGASNHMTGTLQYMHDVKEVIGCPVGLPNCRTTTCTKEGTVKL---TDGLRLEN 90

Query: 251 VLYVPKLNQSLFSVGQLLDK-NYSLLFKDKICEISDPSGSKLFAVKMKRRSFPLHLRNFE 309
           VLYVPKLN +L S+ QLLD+ N ++ F    C I D +   L     +R          +
Sbjct: 91  VLYVPKLNCNLISISQLLDELNCNVQFNGNFCAIQDRTSKMLIGAGEQRDGLYFFREVPK 150

Query: 310 EESC-LSHKEESDLWHKRLGH 329
            ++C +    + ++WHKRLGH
Sbjct: 151 VKACKVEGTNQLEVWHKRLGH 171


>IMGA|Medtr1g102740.1 gag-pol polyprotein, related
           chr01_pseudomolecule_IMGAG_V3 21153367-21155226 E
           EGN_Mt090430 20090702
          Length = 234

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRV-SDV 251
           W+VDSGCT H T +   F  L    ++K  + +G  + ++G G V I++ SG K + ++V
Sbjct: 13  WVVDSGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKLILNNV 72

Query: 252 LYVPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMK-RRSFPLHLRNF 308
            Y+P+   SL SV  LL++ Y +LFK   C I D + +K   ++MK R+ F L   N 
Sbjct: 73  NYIPENCYSLLSVAGLLEEGYQVLFKRNKCLIKDQN-NKFIEIRMKCRKLFVLDSMNI 129


>IMGA|Medtr1g102780.1 gag-pol polyprotein, related
           chr01_pseudomolecule_IMGAG_V3 21184395-21181931 E
           EGN_Mt090430 20090702
          Length = 311

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRV-SDV 251
           W+V+SGCT H T +   F  L    ++K  + +G  + ++G G V I++ SG K + ++V
Sbjct: 36  WVVESGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKLILNNV 95

Query: 252 LYVPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMK-RRSFPLHLRNF 308
            Y+P+   SL SV  LL++ Y +LFK   C I D + +K   ++MK R+ F L   N 
Sbjct: 96  NYIPENCYSLLSVAGLLEEGYQVLFKRNKCLIKDQN-NKFIEIRMKCRKLFVLDSMNI 152


>IMGA|Medtr6g086670.1 gag-pol polyprotein, related
           chr06_pseudomolecule_IMGAG_V3 17772429-17771671 H
           EGN_Mt090430 20090702
          Length = 252

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLD-TNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDV 251
           W +DSG T+HMT +   F  L+ T  S    + +G  ++V+G G + I+  SG K + +V
Sbjct: 13  WHIDSGATHHMTYDRNFFKELNKTAISYNFIVANGAPIEVEGIGTITIRNHSGLKLILNV 72

Query: 252 LYVPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMKRRSF 301
           LYVP L  S+ SV QLL++ + + F  K C I   +  ++  ++M+   F
Sbjct: 73  LYVPNLTSSVLSVPQLLEEGFHVFFIHKACFIKHQNNKEVIKIQMESWKF 122


>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
           chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
           EGN_Mt090430 20090702
          Length = 532

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 186 LIEAKETWLVDSGCTNHMTPNLVNFNSLDT--NYSSKVRLGDGRLVDVKGKGDVIIQTPS 243
           L+   + W+VDSG T H+      F S  +  +   +V LGD R   V GKG VI++  S
Sbjct: 305 LVNDVQKWVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTS 364

Query: 244 G-TKRVSDVLYVPKLNQSLFSVGQL 267
           G T  +SDVL VP +  +L SV  L
Sbjct: 365 GKTLALSDVLNVPTIRTNLISVALL 389


>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
           EGN_Mt090430 20090702
          Length = 883

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 192 TWLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDV 251
           TW+VDSG ++H+  ++ NF+S        ++L +G +   K  G V   +P    R  +V
Sbjct: 321 TWIVDSGASDHICSSIKNFDSYAPIIPVHIKLPNGNMAIAKFSGTVTF-SPGLIAR--NV 377

Query: 252 LYVPKLNQSLFSVGQL-LDKNYSLLFKDKICEISDPSGSKLFAVKMKRRSFPLHLRNFEE 310
           LYV +   +L SV +L +D N  + F +  C I D S  K+  +        L+  N   
Sbjct: 378 LYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEG--LYFLNLGS 435

Query: 311 E--SCLSHK---------------EESDLWHKRLGH 329
           +  S  +H+                +  LWH RLGH
Sbjct: 436 QVFSQFNHQPVIASSQASSSTTFLPQEALWHFRLGH 471


>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
           EGN_Mt090430 20090702
          Length = 790

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 193 WLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDVL 252
           W+VD+G T+H   +L  F S     +  V L +G +++    G V +   S    + +VL
Sbjct: 398 WIVDTGATHHTCYDLNWFTSYSKIETINVNLPNGSVIEACYIGQVKL---SKDLSIDNVL 454

Query: 253 YVPKLNQSLFSVGQLL-DKNYSLLFKDKICEISDPSGSKLFAVKMKRRSF---------P 302
           Y+PK   +L SV +L  ++N  L F+  IC I + +  +   +  ++             
Sbjct: 455 YLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETDERNK 514

Query: 303 LHLRNFEEESCLSHKEESD--LWHKRLGH 329
           + + N   +  L  K   D  LWH RLGH
Sbjct: 515 VSVSNISAQVELHQKHVPDGVLWHLRLGH 543


>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
           EGN_Mt090430 20090702
          Length = 920

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 19/154 (12%)

Query: 192 TWLVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDV 251
           TW+VDSG ++H+  ++  F+S        ++L +G +   K  G V   +P    R  +V
Sbjct: 391 TWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNF-SPGLIAR--NV 447

Query: 252 LYVPKLNQSLFSVGQL-LDKNYSLLFKDKICEISDPSGSKLFAV-KMKRRSFPLHL---- 305
           LYV +   +L SV +L +D N  + F +  C I D S  K+  + ++    + L+L    
Sbjct: 448 LYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQV 507

Query: 306 -RNFEEESCLSHKEESD---------LWHKRLGH 329
              F  +  ++  + S          LWH RLGH
Sbjct: 508 FSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGH 541