Jatropha Genome Database

JcCB0319311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.20 + phase: 0 
         (60 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE ...    67   2e-12
IMGA|Medtr5g106650.2 Multi antimicrobial extrusion protein MatE ...    67   2e-12
IMGA|Medtr2g117440.1 Ribosomal protein S2; Multi antimicrobial e...    60   4e-10
IMGA|Medtr3g028600.1 Multi antimicrobial extrusion protein MatE ...    57   3e-09
IMGA|Medtr7g076340.1 Multi antimicrobial extrusion protein MatE ...    56   5e-09
IMGA|AC235669_9.1 Multi antimicrobial extrusion protein MatE AC2...    52   6e-08
IMGA|Medtr8g037070.1 Multi antimicrobial extrusion protein MatE ...    52   7e-08

>IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42916844 E
           EGN_Mt090430 20090702
          Length = 584

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 42/52 (80%)

Query: 1   MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           +Y GS +FL ++G+++ +P  +PA++FL LRA GAPAVVL LA+QGIFRG +
Sbjct: 217 LYFGSRMFLRLIGVAAVNPTLVPAQKFLSLRAFGAPAVVLSLALQGIFRGFK 268


>IMGA|Medtr5g106650.2 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42912047 E
           EGN_Mt090430 20090702
          Length = 308

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 42/52 (80%)

Query: 1   MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           +Y GS +FL ++G+++ +P  +PA++FL LRA GAPAVVL LA+QGIFRG +
Sbjct: 217 LYFGSRMFLRLIGVAAVNPTLVPAQKFLSLRAFGAPAVVLSLALQGIFRGFK 268


>IMGA|Medtr2g117440.1 Ribosomal protein S2; Multi antimicrobial
           extrusion protein MatE chr02_pseudomolecule_IMGAG_V3
           27589576-27585050 F EGN_Mt090430 20090702
          Length = 507

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 9   LNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           LN MG++S SPM   A+++LKLR++GAPAV+L LA+QG+FRG +
Sbjct: 185 LNFMGVTSDSPMLHHAQQYLKLRSLGAPAVLLSLAMQGVFRGFK 228


>IMGA|Medtr3g028600.1 Multi antimicrobial extrusion protein MatE
           chr03_pseudomolecule_IMGAG_V3 7395363-7402490 E
           EGN_Mt090430 20090702
          Length = 540

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 9   LNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           L  MG+   SPM +PA ++L+LRA+GAPAV+L LA+QGIFRG +
Sbjct: 214 LGAMGLKYDSPMLVPAVKYLRLRALGAPAVLLSLAMQGIFRGFK 257


>IMGA|Medtr7g076340.1 Multi antimicrobial extrusion protein MatE
           chr07_pseudomolecule_IMGAG_V3 15488888-15491081 E
           EGN_Mt090430 20090702
          Length = 297

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 1   MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           + LGSG  + ++GI++ SP+R PAE FL LRA GA  +V+ LA QG FRG +
Sbjct: 230 LSLGSGPLMTILGIAADSPIREPAEHFLTLRAFGALPIVIALAAQGTFRGFK 281


>IMGA|AC235669_9.1 Multi antimicrobial extrusion protein MatE
           AC235669.1 42208-45531 E EGN_Mt090430 20090702
          Length = 444

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 3   LGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
            G+   L +MG+   SPM  PA ++L  R+ GAPAV+L LA+QGIFRG +
Sbjct: 116 FGAKPLLYVMGVKHGSPMLKPAVKYLTYRSFGAPAVLLSLAMQGIFRGFK 165


>IMGA|Medtr8g037070.1 Multi antimicrobial extrusion protein MatE
           chr08_pseudomolecule_IMGAG_V3 7943388-7936162 E
           EGN_Mt090430 20090702
          Length = 620

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query: 4   GSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           G+   L +MG+   SPM  PA ++L  R+ GAPAV+L LA+QGIFRG +
Sbjct: 293 GAKPLLYVMGVKHGSPMLKPAVKYLTYRSFGAPAVLLSLAMQGIFRGFK 341