Jatropha Genome Database

JcCB0319311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.10 - phase: 0 /partial
         (117 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g088410.1 AMP-dependent synthetase and ligase chr08_p...   121   9e-29
IMGA|Medtr8g088460.1 AMP-dependent synthetase and ligase family ...   114   1e-26
IMGA|Medtr5g008870.1 AMP-dependent synthetase and ligase chr05_p...    99   5e-22
IMGA|Medtr5g008840.1 AMP-dependent synthetase and ligase chr05_p...    91   1e-19
IMGA|Medtr5g023600.1 AMP-dependent synthetase and ligase chr05_p...    80   3e-16
IMGA|Medtr5g084090.1 AMP-dependent synthetase and ligase chr05_p...    77   1e-15
IMGA|Medtr3g086630.1 AMP-dependent synthetase and ligase chr03_p...    70   2e-13
IMGA|Medtr8g138110.1 AMP-dependent synthetase and ligase chr08_p...    68   1e-12
IMGA|Medtr5g084070.1 AMP-dependent synthetase and ligase chr05_p...    67   3e-12
IMGA|Medtr5g084060.1 AMP-dependent synthetase and ligase chr05_p...    66   4e-12

>IMGA|Medtr8g088410.1 AMP-dependent synthetase and ligase
           chr08_pseudomolecule_IMGAG_V3 18721448-18724601 E
           EGN_Mt090430 20090702
          Length = 607

 Score =  121 bits (303), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/117 (55%), Positives = 81/117 (69%), Gaps = 8/117 (6%)

Query: 1   MNHLFKNKSYYFYCTRFISSSFNRFLFNFPQNSRIFSYFPGDFEPESWKPMEGLVRCSAN 60
           MN++FK   +    T F  S+ + F       SR FS F  D +  SW+ M+GLV C AN
Sbjct: 1   MNNIFKIMLWTRSLTHF-RSTHHTF-------SRKFSNFSKDPDRGSWESMQGLVHCHAN 52

Query: 61  FVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLGISRGDVV 117
            VPLSPI+FLERAAKV RDR S+VYGS+ Y W +T++RCL LAS+LT+LGISRGDVV
Sbjct: 53  SVPLSPINFLERAAKVCRDRTSLVYGSLKYNWGQTHQRCLKLASSLTQLGISRGDVV 109


>IMGA|Medtr8g088460.1 AMP-dependent synthetase and ligase family
           protein, putative chr08_pseudomolecule_IMGAG_V3
           18742584-18744059 E EGN_Mt090430 20090702
          Length = 135

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 33  SRIFSYFPGDFEPESWKPMEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTW 92
            ++ +  P D  P SW+ MEGLV C+AN VPLSPI+FLERAAKV RDR S+VYGS+ Y W
Sbjct: 49  GKLPTILPWDVVPGSWESMEGLVHCNANSVPLSPINFLERAAKVCRDRTSLVYGSLKYNW 108

Query: 93  NETYKRCLSLASTLTRLGISRGD 115
            +T++RCL LAS L++LGISRGD
Sbjct: 109 GQTHQRCLKLASALSQLGISRGD 131


>IMGA|Medtr5g008870.1 AMP-dependent synthetase and ligase
           chr05_pseudomolecule_IMGAG_V3 1774123-1771901 E
           EGN_Mt090430 20090702
          Length = 548

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 58/67 (86%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           MEG ++C+AN+VPL+PISFLER+A VY D+ S++YG V YTW++T++RC+ LAS++++LG
Sbjct: 1   MEGSIKCNANYVPLTPISFLERSAIVYSDKVSIIYGDVTYTWSQTHQRCIKLASSISQLG 60

Query: 111 ISRGDVV 117
           +S  DVV
Sbjct: 61  VSPNDVV 67


>IMGA|Medtr5g008840.1 AMP-dependent synthetase and ligase
           chr05_pseudomolecule_IMGAG_V3 1756760-1753660 E
           EGN_Mt090430 20090702
          Length = 551

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 56/67 (83%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           MEG ++C+AN+VPL+PISFLER+A VY ++ S++Y  V YTW++T++RC+ LAS++++LG
Sbjct: 1   MEGTIQCNANYVPLTPISFLERSAIVYSNKVSIIYNDVTYTWSQTHQRCIKLASSISQLG 60

Query: 111 ISRGDVV 117
           +S   VV
Sbjct: 61  VSPHHVV 67


>IMGA|Medtr5g023600.1 AMP-dependent synthetase and ligase
           chr05_pseudomolecule_IMGAG_V3 9286141-9291825 F
           EGN_Mt090430 20090702
          Length = 550

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 52  EGLVRCS-ANFVPLSPISFLERAAKVYRDRKSVVYGS-VVYTWNETYKRCLSLASTLTRL 109
           + LV CS  + +PL+PI FLERAA VY D+ S++Y   V ++W ETY+RCL LAS L  L
Sbjct: 3   QDLVECSKGSHIPLTPICFLERAATVYGDKVSIIYNDHVRFSWRETYERCLKLASALVNL 62

Query: 110 GISRGDVV 117
           GIS GD+V
Sbjct: 63  GISNGDIV 70


>IMGA|Medtr5g084090.1 AMP-dependent synthetase and ligase
           chr05_pseudomolecule_IMGAG_V3 31970543-31968609 E
           EGN_Mt090430 20090702
          Length = 562

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L    AN  PL+P++FLER + +Y +  S++Y   V+TW++T+KRCL LAS +T LG
Sbjct: 1   MDQLKPTQANNSPLTPLTFLERTSTIYPNTPSIIYNDTVFTWSQTHKRCLQLASAITSLG 60

Query: 111 ISRGDVV 117
           I RG+VV
Sbjct: 61  IRRGNVV 67


>IMGA|Medtr3g086630.1 AMP-dependent synthetase and ligase
           chr03_pseudomolecule_IMGAG_V3 20332305-20329842 E
           EGN_Mt090430 20090702
          Length = 582

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 46/67 (68%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L +C AN+  L+P++FL RA+  Y +R SV++    +TW++TY RC  LAS+L  L 
Sbjct: 1   MDNLPKCRANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALN 60

Query: 111 ISRGDVV 117
           I++ DVV
Sbjct: 61  IAKNDVV 67


>IMGA|Medtr8g138110.1 AMP-dependent synthetase and ligase
           chr08_pseudomolecule_IMGAG_V3 33219062-33221998 F
           EGN_Mt090430 20090702
          Length = 566

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 47/67 (70%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           ++ L + +AN+  L+P+ FLERAA+V+  RKS+++GS  YTW +TY+RC   AS L+   
Sbjct: 7   IDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSRHYTWRQTYQRCRRFASALSNRS 66

Query: 111 ISRGDVV 117
           I+ G+ V
Sbjct: 67  IALGNTV 73


>IMGA|Medtr5g084070.1 AMP-dependent synthetase and ligase
           chr05_pseudomolecule_IMGAG_V3 31961125-31962816 E
           EGN_Mt090430 20090702
          Length = 563

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L R  AN   L+P++FLERAA VY +  S++Y +  +TW++T+KRCL LAS+L+ LG
Sbjct: 1   MDQLTRNQANSTALTPLTFLERAATVYGNSISIIYNNTSFTWSQTHKRCLQLASSLSSLG 60

Query: 111 ISRGDVV 117
           I +GDVV
Sbjct: 61  IQKGDVV 67


>IMGA|Medtr5g084060.1 AMP-dependent synthetase and ligase
           chr05_pseudomolecule_IMGAG_V3 31954810-31953119 E
           EGN_Mt090430 20090702
          Length = 563

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M  L R  AN   L+P++FLERAA VY +  S++Y +  +TW++T+KRCL LAS+L+ LG
Sbjct: 1   MNQLTRNQANSTALTPLTFLERAATVYGNSISIIYNNTSFTWSQTHKRCLQLASSLSSLG 60

Query: 111 ISRGDVV 117
           I +GDVV
Sbjct: 61  IQKGDVV 67