Jatropha Genome Database

JcCB0317901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317901.10 - phase: 0 /partial
         (280 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g079110.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...   388   e-108
IMGA|Medtr1g096550.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...   285   2e-77
IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...   256   1e-68
IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3 exonuc...   234   3e-62
IMGA|AC146557_9.1 Putative 5-3 exonuclease AC146557.33 43451-495...   223   1e-58

>IMGA|Medtr4g079110.1 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr04_pseudomolecule_IMGAG_V3
           15747564-15753520 E EGN_Mt090430 20090702
          Length = 809

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/272 (70%), Positives = 211/272 (77%), Gaps = 4/272 (1%)

Query: 8   VARFHGSRLASAPSLSPFQHSLESSSDGKGSFVWAKKVARTSSSASVGAAIVEAENSLEI 67
           +++FHGSRLASA   SPFQ     S   K       KV+R SS  +V AAIVEAENSLEI
Sbjct: 273 ISQFHGSRLASALMPSPFQ----QSGHNKEVLEKPSKVSRLSSGVTVVAAIVEAENSLEI 328

Query: 68  EAHXXXXXXXXXXXXXXXXXSDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEELED 127
           +                   SDVFNSK   EDK+KLGEPGWKERYYEEKF  KT EEL  
Sbjct: 329 DVQDNEDELKAKLKRILLDKSDVFNSKGGHEDKIKLGEPGWKERYYEEKFSAKTPEELVA 388

Query: 128 IRRDVALRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPFKP 187
           IR+DV L+YTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLK L ++NI FELG+PFKP
Sbjct: 389 IRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLSELNINFELGAPFKP 448

Query: 188 FNQLLGVFPAASSHALPVNYRKLMTDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFID 247
           F+QL+GVFPAASSHALP  YRKLMTDP+SPIIDFYP DFEVDMNGKR+AWQGIAKLPFID
Sbjct: 449 FDQLIGVFPAASSHALPETYRKLMTDPSSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFID 508

Query: 248 EARLLAEVKKIEHTLTEEEARRNSVMFDMLFV 279
           E RLLA V+KIE+ LT EE RRN++MFDMLFV
Sbjct: 509 ETRLLAAVQKIENFLTPEEKRRNAIMFDMLFV 540


>IMGA|Medtr1g096550.1 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr01_pseudomolecule_IMGAG_V3
           19776783-19768494 E EGN_Mt090430 20090702
          Length = 883

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%)

Query: 99  DKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFY 158
           DKVKLGEPG+KERYY EKF   +LEE++ +++D+ L+Y EGLCWV  YYY GVCSW+W+Y
Sbjct: 359 DKVKLGEPGYKERYYAEKFGASSLEEIDKVKKDIVLKYVEGLCWVCQYYYNGVCSWKWYY 418

Query: 159 PYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPI 218
           PYHYAPFASDLK+L  + I F  G PFKPF+QL+GV PA+SS+ALP  YR LMTDP+SPI
Sbjct: 419 PYHYAPFASDLKDLPNLEIIFSPGEPFKPFDQLMGVLPASSSNALPDKYRDLMTDPSSPI 478

Query: 219 IDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFDMLF 278
             FYP DFE+DMNGKR+AWQG+AKLPFIDE +LLA  +K+E TLTEEE RRNSVM D+L+
Sbjct: 479 FHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKLEDTLTEEEQRRNSVMLDLLY 538

Query: 279 V 279
           V
Sbjct: 539 V 539


>IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr07_pseudomolecule_IMGAG_V3
           33823109-33833019 E EGN_Mt090430 20090702
          Length = 956

 Score =  256 bits (653), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 114/181 (62%), Positives = 145/181 (80%), Gaps = 1/181 (0%)

Query: 99  DKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFY 158
           DKVKLG+PG+ ERYY EKF      E+E I++D+ L+Y EGLCWV  YYY+GVCSWQW+Y
Sbjct: 439 DKVKLGQPGYTERYYAEKFGASD-PEIERIKKDIVLKYVEGLCWVCRYYYQGVCSWQWYY 497

Query: 159 PYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPI 218
           PYHYAPFASDLK+L  + I F +G PF+PF+QL+G  P++SS ALP  YR LM +P+SPI
Sbjct: 498 PYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSSSSALPERYRDLMINPSSPI 557

Query: 219 IDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSVMFDMLF 278
           + FYP+DFE+DMNGK+Y+WQG+AKLPFIDE +LL+  + +E TLTEEE  RNS M D+L+
Sbjct: 558 LQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLEGTLTEEEQLRNSKMLDLLY 617

Query: 279 V 279
           V
Sbjct: 618 V 618


>IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3
           exonuclease chr07_pseudomolecule_IMGAG_V3
           33823109-33830234 E EGN_Mt090430 20090702
          Length = 629

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 133/165 (80%), Gaps = 1/165 (0%)

Query: 99  DKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYYYEGVCSWQWFY 158
           DKVKLG+PG+ ERYY EKF      E+E I++D+ L+Y EGLCWV  YYY+GVCSWQW+Y
Sbjct: 439 DKVKLGQPGYTERYYAEKFGASD-PEIERIKKDIVLKYVEGLCWVCRYYYQGVCSWQWYY 497

Query: 159 PYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNYRKLMTDPNSPI 218
           PYHYAPFASDLK+L  + I F +G PF+PF+QL+G  P++SS ALP  YR LM +P+SPI
Sbjct: 498 PYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSSSSALPERYRDLMINPSSPI 557

Query: 219 IDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLT 263
           + FYP+DFE+DMNGK+Y+WQG+AKLPFIDE +LL+  + +E TLT
Sbjct: 558 LQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLEGTLT 602


>IMGA|AC146557_9.1 Putative 5-3 exonuclease AC146557.33 43451-49538
           H EGN_Mt090430 20090702
          Length = 863

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 134/192 (69%)

Query: 88  SDVFNSKNPEEDKVKLGEPGWKERYYEEKFYVKTLEELEDIRRDVALRYTEGLCWVMHYY 147
            D+F S +   DK+KLG  G+KERYY+EKF V+    +E  R+++  +YTEGL WV+ YY
Sbjct: 454 GDLFKSGDFLTDKIKLGNVGFKERYYKEKFSVEGSTNIELKRKEIVQKYTEGLLWVLQYY 513

Query: 148 YEGVCSWQWFYPYHYAPFASDLKNLDQMNIEFELGSPFKPFNQLLGVFPAASSHALPVNY 207
           + GV SW WFYPYHY PF SDLK + Q+ + FE G PF PF+QLL V P  S++ALP  Y
Sbjct: 514 FSGVASWTWFYPYHYGPFVSDLKGMAQVRVNFEKGVPFLPFDQLLSVLPQKSAYALPKAY 573

Query: 208 RKLMTDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEA 267
            +LM D  S I D Y  DFE+D+ GKR+ WQG+ KLP++DE RLL E +++++ L+E EA
Sbjct: 574 AQLMLDEQSKIFDLYSQDFEIDIEGKRFMWQGVCKLPYMDEKRLLTETRELKNELSESEA 633

Query: 268 RRNSVMFDMLFV 279
           +RNSV  D L V
Sbjct: 634 KRNSVEVDRLLV 645