Jatropha Genome Database

JcCB0317401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0317401.10 + phase: 0 
         (112 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g127630.1 Replication factor A protein 3 chr07_pseudo...    79   4e-16

>IMGA|Medtr7g127630.1 Replication factor A protein 3
           chr07_pseudomolecule_IMGAG_V3 29974890-29972198 E
           EGN_Mt090430 20090702
          Length = 166

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 1   METSSPAIFVNGETLQMYTGKKVRAVVQVIECDGGNTIVKSTDEHEWIVKELPLPSVPLL 60
           M+  SPA+ VN E L  Y G++VR V+QV+  D    I KS DE + IVK    P  PL 
Sbjct: 61  MDPLSPAVIVNAELLPFYVGRRVRTVMQVVRSDVLAVIGKSPDEKQLIVKG--SPPAPLT 118

Query: 61  NYIEVIGVAETNKSIRAELCTDFGNTFGM 89
           +++EVIG+  ++KSI+AEL T+FG+   M
Sbjct: 119 SFVEVIGIVNSDKSIKAELWTNFGDEIDM 147