Jatropha Genome Database

JcCB0316661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0316661.10 + phase: 0 /partial
         (55 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g024130.2 Rab escort (choroideraemia) protein chr05_p...    66   4e-12
IMGA|Medtr5g024130.1 Rab GTPase activator chr05_pseudomolecule_I...    66   5e-12

>IMGA|Medtr5g024130.2 Rab escort (choroideraemia) protein
           chr05_pseudomolecule_IMGAG_V3 9548364-9542041 F
           EGN_Mt090430 20090702
          Length = 309

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 1   AQFDSISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDSEND 51
           ++F++ISST  PD  L+Y D+LD   KLF +MYPNEEFFP+T SPED+ +D
Sbjct: 250 SKFEAISSTPTPDGNLNYVDLLDETEKLFGQMYPNEEFFPKTTSPEDTMDD 300


>IMGA|Medtr5g024130.1 Rab GTPase activator
           chr05_pseudomolecule_IMGAG_V3 9548364-9542041 F
           EGN_Mt090430 20090702
          Length = 552

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 1   AQFDSISSTSMPDAKLDYGDVLDSAIKLFEKMYPNEEFFPETVSPEDSEND 51
           ++F++ISST  PD  L+Y D+LD   KLF +MYPNEEFFP+T SPED+ +D
Sbjct: 493 SKFEAISSTPTPDGNLNYVDLLDETEKLFGQMYPNEEFFPKTTSPEDTMDD 543