Jatropha Genome Database
- JcCB0313501.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0313501.20 - phase: 1 /TE/partial
(484 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 131 9e-31
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 117 2e-26
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 115 4e-26
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 115 5e-26
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 110 2e-24
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 108 5e-24
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 103 2e-22
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 78 1e-14
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 77 2e-14
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 75 6e-14
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 56 4e-08
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 52 5e-07
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 51 2e-06
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 52 FMKNVALXHTC----YAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIY 107
F+ N++ H C Y +A + A AM +E ++ N TW LT P D+K +G +W+Y
Sbjct: 326 FIMNIS--HDCEPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVY 383
Query: 108 RLKLNLDGIIFKHKARLVVKGYAQLLVIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHF 167
++K DG + ++KARLVVKGY Q I+Y +TF+P+ + TVR LI AA +WN++
Sbjct: 384 KVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQL 443
Query: 168 DVKSAFTNGFLEEEIFIEXAKGFLIAGCEDKVYKLSKALYGLKQA 212
DV +AF +G L EE++++ G L +D V KL+K+LYGLKQA
Sbjct: 444 DVNNAFLHGDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYGLKQA 487
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 62 CYAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHK 121
YA+A +E AM EL+ + + TW P + K IG +W++++K + DG I ++K
Sbjct: 869 TYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYK 928
Query: 122 ARLVVKGYAQLLVIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEEE 181
ARLV KGY Q+ ++Y DTF+P+A+ TVRL+I A+ W+++ DV +AF +G L+E
Sbjct: 929 ARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQEN 988
Query: 182 IFIEXAKGFLIAGCEDKVYKLSKALYGLKQAPK 214
+++ G + A + V KL+K+LYGLKQA +
Sbjct: 989 VYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASR 1020
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 63 YAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKA 122
YA+A + AM EL+ + K TW L P + K IG +WIY++K + DG + ++KA
Sbjct: 896 YAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVERYKA 955
Query: 123 RLVVKGYAQLLVIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEEEI 182
RLV KGY Q+ ++Y DT++P+A+ TVRL+I ++ W+++ DV +AF +G L+E++
Sbjct: 956 RLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDV 1015
Query: 183 FIEXAKGFLIAGCEDKVYKLSKALYGLKQAPK 214
++ G + + ++V KL+K+LYGLKQA +
Sbjct: 1016 YMMVPPG-IKSSKLNQVCKLTKSLYGLKQASR 1046
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 61 TCYAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKH 120
T Y +A ++ AM EL + K TW + P K IG +WIY++K N DG I ++
Sbjct: 740 TTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIERY 799
Query: 121 KARLVVKGYAQLLVIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEE 180
KARLV KGY Q+ ++Y +T++P+A+ TVRL+I A+ W+++ DV +AF +G L+E
Sbjct: 800 KARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQE 859
Query: 181 EIFIEXAKGFLIAGCEDKVYKLSKALYGLKQAPK 214
++++ G IA +V KL K+LYGLKQA +
Sbjct: 860 DVYMILPPGINIAKPH-QVCKLKKSLYGLKQASR 892
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 76 MXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLVVKGYAQLLVI 135
M E+ + + TW + P K IG +WI+++K N+DG I ++KARLV KGY Q+ +
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 136 EYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEEEIFIEXAKGFLIAGC 195
+Y DT++P+A+ TVR +I A+ W+++ FDV +AF +G L+E++++ G +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 196 EDKVYKLSKALYGLKQA 212
+D+V KL+K+LYGL+QA
Sbjct: 120 QDEVCKLNKSLYGLQQA 136
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 61 TCYAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKH 120
T YA+A + AM EL + TW L P + K I +WIY++K + DG I ++
Sbjct: 885 TTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIERY 944
Query: 121 KARLVVKGYAQLLVIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEE 180
KARLV KGY Q+ ++Y DT++P+A+ TVR +I A W+++ DV +AF +G L+E
Sbjct: 945 KARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDLQE 1004
Query: 181 EIFIEXAKGFLIAGCEDKVYKLSKALYGLKQAPK 214
++++ +G + ++V KL K+LYGLKQA +
Sbjct: 1005 DVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASR 1037
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 81/128 (63%)
Query: 62 CYAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHK 121
Y +A E AM EL + TW + P++ K IG +WIY++K + DG I ++K
Sbjct: 914 SYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIERYK 973
Query: 122 ARLVVKGYAQLLVIEYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEEE 181
ARLV KGY Q+ ++Y DT++P+A+H T+RL++ A+ W+++ DV +AF +G L+E+
Sbjct: 974 ARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQED 1033
Query: 182 IFIEXAKG 189
++++ G
Sbjct: 1034 VYMDIPPG 1041
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 28/137 (20%)
Query: 76 MXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLVVKGYAQLLVI 135
M E+ + TW L P + K IG +WIY++K DG I ++KARLVVKGY Q+
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 136 EYGDTFAP----------------------------IARHDTVRLLITFAAXIKWNVYHF 167
+Y DT++P +A+ TVR +I A+ +W+++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 168 DVKSAFTNGFLEEEIFI 184
D SAF +G L+E++++
Sbjct: 121 DANSAFLHGDLQEDVYM 137
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 55/91 (60%)
Query: 62 CYAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHK 121
Y +A E AM EL + TW + P + K IG +WIY++K N D I ++K
Sbjct: 294 TYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIERYK 353
Query: 122 ARLVVKGYAQLLVIEYGDTFAPIARHDTVRL 152
ARLV KGY Q+ ++Y DT++P+A+H T+RL
Sbjct: 354 ARLVAKGYNQVEGLDYFDTYSPVAKHTTIRL 384
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 75.5 bits (184), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 63/140 (45%), Gaps = 41/140 (29%)
Query: 76 MXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLVVKGYAQLLVI 135
M EEL I KN+T L D K IGVKW+Y+LK N +G I K
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGKIVK---------------- 44
Query: 136 EYGDTFAPIARHDTVRLLITFAAXIKWNVYHFDVKSAFTNGFLEEEIFIEXAKGFLIAGC 195
K ++HFD+K F NG LEE +F++ G I
Sbjct: 45 -------------------------KVPLFHFDMKLYFLNGSLEETMFVKQPSGLEIKCK 79
Query: 196 EDKVYKLSKALYGLKQAPKG 215
E+ VYKL K LYGLKQAP+
Sbjct: 80 EENVYKLHKDLYGLKQAPRA 99
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%)
Query: 62 CYAKALTNEAXVAAMXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHK 121
Y +A E AM EL + TW + P + K IG +WIY++K + DG I ++K
Sbjct: 387 TYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYK 446
Query: 122 ARLVVKGYAQL 132
ARLV KGY QL
Sbjct: 447 ARLVAKGYNQL 457
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 79 ELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLVVK 127
+L+ KN+TW L + +K I VKW+++LKLN +G I KHKARLV +
Sbjct: 203 KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVAR 251
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 76 MXEELRMINKNETWFLTYRPNDRKVIGVKWIYRLKLNLDGIIFKHKARLVVKGYAQLLVI 135
M +LR I W LT D+ VIG KW YR+K ++G I + K L+VK Y + +
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 136 EYGDTFAPIARHDTVRLLIT 155
DTF+ +A+ V LL++
Sbjct: 61 NSLDTFSLVAKITIVCLLLS 80