Jatropha Genome Database
- JcCB0308331.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0308331.10 + phase: 0 /partial
(60 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g095400.1 Sigma-54 factor, interaction region; Ras sm... 124 9e-30
IMGA|Medtr4g009230.1 Sigma-54 factor, interaction region; Ras sm... 117 1e-27
IMGA|Medtr2g122890.1 Sigma-54 factor, interaction region; Ras sm... 113 2e-26
IMGA|Medtr4g141030.1 Sigma-54 factor, interaction region; Ras sm... 97 2e-21
IMGA|Medtr5g014080.1 Ras small GTPase, Rab type; chr05_pseudomol... 57 2e-09
IMGA|Medtr3g101760.1 Ras GTPase; chr03_pseudomolecule_IMGAG_V3 2... 55 6e-09
IMGA|Medtr2g005340.1 Sigma-54 factor, interaction region; Ras sm... 53 4e-08
IMGA|Medtr4g109180.1 Sigma-54 factor, interaction region; Ras sm... 53 4e-08
IMGA|Medtr2g018470.1 Sigma-54 factor, interaction region; Ras sm... 52 5e-08
IMGA|Medtr2g132390.1 Sigma-54 factor, interaction region; Ras sm... 50 3e-07
IMGA|Medtr3g092520.1 Sigma-54 factor, interaction region; Ras sm... 49 7e-07
IMGA|Medtr2g091780.1 Sigma-54 factor, interaction region; Ras sm... 48 1e-06
IMGA|Medtr2g097820.1 Sigma-54 factor, interaction region; Ras sm... 47 3e-06
IMGA|Medtr1g081200.3 Sigma-54 factor, interaction region; Ras sm... 47 3e-06
IMGA|Medtr1g081200.1 Sigma-54 factor, interaction region; Ras sm... 46 5e-06
IMGA|Medtr7g046180.1 Ras-related protein ARA-1, putative chr07_p... 46 5e-06
IMGA|Medtr2g005330.1 Ras GTPase chr02_pseudomolecule_IMGAG_V3 18... 46 6e-06
IMGA|Medtr2g005330.2 Ras GTPase chr02_pseudomolecule_IMGAG_V3 18... 45 6e-06
IMGA|Medtr4g155130.1 Ras small GTPase, Rab type; chr04_pseudomol... 45 9e-06
>IMGA|Medtr4g095400.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type chr04_pseudomolecule_IMGAG_V3
19838057-19834450 F EGN_Mt090430 20090702
Length = 206
Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
>IMGA|Medtr4g009230.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type chr04_pseudomolecule_IMGAG_V3
1421872-1425592 F EGN_Mt090430 20090702
Length = 207
Score = 117 bits (294), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/60 (95%), Positives = 58/60 (96%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
>IMGA|Medtr2g122890.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type chr02_pseudomolecule_IMGAG_V3
29644699-29641448 E EGN_Mt090430 20090702
Length = 209
Score = 113 bits (283), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/58 (94%), Positives = 56/58 (96%)
Query: 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQ EDRLFTLQ
Sbjct: 5 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQVEDRLFTLQ 62
>IMGA|Medtr4g141030.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type chr04_pseudomolecule_IMGAG_V3
34720246-34722755 E EGN_Mt090430 20090702
Length = 209
Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/57 (80%), Positives = 52/57 (91%)
Query: 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
R+RTLLKVI+LGDSGVGKTSLMNQYV KKFS QYKATIGADF+TKE+ +D+L TLQ
Sbjct: 8 RKRTLLKVIVLGDSGVGKTSLMNQYVYKKFSQQYKATIGADFVTKELLVDDKLVTLQ 64
>IMGA|Medtr5g014080.1 Ras small GTPase, Rab type;
chr05_pseudomolecule_IMGAG_V3 4443349-4447486 E
EGN_Mt090430 20090702
Length = 223
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + EDR LQ
Sbjct: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
>IMGA|Medtr3g101760.1 Ras GTPase; chr03_pseudomolecule_IMGAG_V3
24679515-24681411 E EGN_Mt090430 20090702
Length = 101
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
K++ LGD VGKTS++ +++ KF Y+ATIG DFL+K + EDR LQ
Sbjct: 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
>IMGA|Medtr2g005340.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr02_pseudomolecule_IMGAG_V3
188745-187533 F EGN_Mt090430 20090702
Length = 220
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 1 MPSRRRT-------LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE 53
M SRRR L KV+++GDSGVGK++L++++ +F + K+TIG +F T+ +Q E
Sbjct: 1 MSSRRRVGEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE 60
Query: 54 DRLFTLQ 60
R Q
Sbjct: 61 GRTVKAQ 67
>IMGA|Medtr4g109180.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr04_pseudomolecule_IMGAG_V3
24355316-24353037 E EGN_Mt090430 20090702
Length = 217
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 39/53 (73%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + +D++ Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQ 65
>IMGA|Medtr2g018470.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr02_pseudomolecule_IMGAG_V3
4871209-4868238 F EGN_Mt090430 20090702
Length = 217
Score = 52.4 bits (124), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 40/53 (75%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ ++ +D++ Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQ 65
>IMGA|Medtr2g132390.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr02_pseudomolecule_IMGAG_V3
31999589-31997335 F EGN_Mt090430 20090702
Length = 215
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 39/53 (73%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ V+ D+L Q
Sbjct: 11 LFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVRILDKLVKAQ 63
>IMGA|Medtr3g092520.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr03_pseudomolecule_IMGAG_V3
21753746-21751718 E EGN_Mt090430 20090702
Length = 216
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 37/53 (69%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L K++++GDSGVGK+++++++ +F + K+TIG +F T+ +Q E + Q
Sbjct: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTIQVEGKTVKAQ 64
>IMGA|Medtr2g091780.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr02_pseudomolecule_IMGAG_V3
20763526-20767375 E EGN_Mt090430 20090702
Length = 217
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ + + ++ Q
Sbjct: 13 LFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQ 65
>IMGA|Medtr2g097820.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type; chr02_pseudomolecule_IMGAG_V3
22987161-22993145 E EGN_Mt090430 20090702
Length = 218
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L K++++GDSGVGK++L++++ +F+ + K+TIG +F TK + + ++ Q
Sbjct: 13 LFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLTVDAKVIKAQ 65
>IMGA|Medtr1g081200.3 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type chr01_pseudomolecule_IMGAG_V3
16060257-16054311 E EGN_Mt090430 20090702
Length = 171
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 2 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLF 57
P+R R+ L+K++++GDSGVGK+ L+ ++ + F+ + TIG DF + ++ + +
Sbjct: 5 PARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
Query: 58 TLQ 60
LQ
Sbjct: 65 KLQ 67
>IMGA|Medtr1g081200.1 Sigma-54 factor, interaction region; Ras
small GTPase, Rab type chr01_pseudomolecule_IMGAG_V3
16060257-16053471 E EGN_Mt090430 20090702
Length = 216
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 2 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLF 57
P+R R+ L+K++++GDSGVGK+ L+ ++ + F+ + TIG DF + ++ + +
Sbjct: 5 PARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
Query: 58 TLQ 60
LQ
Sbjct: 65 KLQ 67
>IMGA|Medtr7g046180.1 Ras-related protein ARA-1, putative
chr07_pseudomolecule_IMGAG_V3 11284278-11288236 F
EGN_Mt090430 20090702
Length = 215
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 35/48 (72%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR 55
L K++++GDS VGK++L++++ +F + KATIG +F T+ V+ + +
Sbjct: 13 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQMVEIDGK 60
>IMGA|Medtr2g005330.1 Ras GTPase chr02_pseudomolecule_IMGAG_V3
184635-185968 F EGN_Mt090430 20090702
Length = 203
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L K++I+GDS VGK+ L+ ++ + + + Y +TIG DF + V+ E + LQ
Sbjct: 9 LFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFKIRTVELEGKTAKLQ 61
>IMGA|Medtr2g005330.2 Ras GTPase chr02_pseudomolecule_IMGAG_V3
184635-185968 F EGN_Mt090430 20090702
Length = 163
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L K++I+GDS VGK+ L+ ++ + + + Y +TIG DF + V+ E + LQ
Sbjct: 9 LFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFKIRTVELEGKTAKLQ 61
>IMGA|Medtr4g155130.1 Ras small GTPase, Rab type;
chr04_pseudomolecule_IMGAG_V3 38225938-38227119 E
EGN_Mt090430 20090702
Length = 83
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
L K +++GDSGVGK++L++++ +F K TIG +F + ++ D+L Q
Sbjct: 14 LFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQ 66