Jatropha Genome Database

JcCB0305141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0305141.10 - phase: 0 /partial
         (50 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g092580.1 hypothetical protein chr03_pseudomolecule_I...    67   1e-12
IMGA|Medtr7g046740.1 hypothetical protein chr07_pseudomolecule_I...    45   9e-06

>IMGA|Medtr3g092580.1 hypothetical protein
          chr03_pseudomolecule_IMGAG_V3 21789258-21788271 E
          EGN_Mt090430 20090702
          Length = 170

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 39/43 (90%)

Query: 3  TSIHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTC 45
          TS+HITALD I NVNSLFTL VF+GL++NP+DP+N+L T+P+C
Sbjct: 8  TSVHITALDAITNVNSLFTLGVFIGLSFNPNDPSNTLNTNPSC 50


>IMGA|Medtr7g046740.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 11586854-11587803 F
          EGN_Mt090430 20090702
          Length = 172

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 5  IHITALDGIINVNSLFTLAVFLGLAWNPSDPNNSLITDPTCAA 47
          +H+TALDG++NVNSLFT+AVF+GL+   +    SL    +C A
Sbjct: 9  VHVTALDGLVNVNSLFTIAVFVGLSL-TTPGQRSLENRSSCDA 50