Jatropha Genome Database

JcCB0304081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0304081.10 + phase: 0 
         (135 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g020760.1 Trimeric LpxA-like chr05_pseudomolecule_IMG...    62   7e-11
IMGA|Medtr5g020760.2 Trimeric LpxA-like chr05_pseudomolecule_IMG...    62   1e-10

>IMGA|Medtr5g020760.1 Trimeric LpxA-like
           chr05_pseudomolecule_IMGAG_V3 7852072-7856092 E
           EGN_Mt090430 20090702
          Length = 270

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 43  RVKWDYRGQRQI------IPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRG 96
           R++ +Y  Q Q+      + +   +P V  DA++AP+  + G V +   +S+W G VLRG
Sbjct: 28  RLQGNYFFQEQLSRHRPLMNVYDKVPYVHKDAFIAPSASITGDVQIGHASSIWYGCVLRG 87

Query: 97  DLNKITVGFCSNVQERCVVHAAWNSPTG 124
           D+N IT+G  +N+Q+  +VH A ++ +G
Sbjct: 88  DVNNITIGSSTNIQDNSLVHVAKSNLSG 115


>IMGA|Medtr5g020760.2 Trimeric LpxA-like
           chr05_pseudomolecule_IMGAG_V3 7852072-7855511 E
           EGN_Mt090430 20090702
          Length = 201

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 43  RVKWDYRGQRQI------IPLGQWLPKVAVDAYVAPNVVLAGQVTVCDGASVWSGSVLRG 96
           R++ +Y  Q Q+      + +   +P V  DA++AP+  + G V +   +S+W G VLRG
Sbjct: 28  RLQGNYFFQEQLSRHRPLMNVYDKVPYVHKDAFIAPSASITGDVQIGHASSIWYGCVLRG 87

Query: 97  DLNKITVGFCSNVQERCVVHAAWNSPTG 124
           D+N IT+G  +N+Q+  +VH A ++ +G
Sbjct: 88  DVNNITIGSSTNIQDNSLVHVAKSNLSG 115