Jatropha Genome Database

JcCB0302981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302981.20 + phase: 0 /partial
         (178 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g009690.1 KH, type 1 chr02_pseudomolecule_IMGAG_V3 21...   132   1e-31
IMGA|Medtr4g121220.1 KH, type 1 chr04_pseudomolecule_IMGAG_V3 28...    97   6e-21
IMGA|Medtr5g033090.1 KH, type 1 chr05_pseudomolecule_IMGAG_V3 13...    65   2e-11

>IMGA|Medtr2g009690.1 KH, type 1 chr02_pseudomolecule_IMGAG_V3
           2180637-2187804 E EGN_Mt090430 20090702
          Length = 767

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 98/175 (56%), Gaps = 8/175 (4%)

Query: 1   MGSTFLSPPLKRTIHYSTITAGMPDPNSINGTSNKRSKXXX--XXXXXXXXGHVSFRLLC 58
           MGS FLSPP KR+I       G+PDPN     S+KR+K             GHV+FRLLC
Sbjct: 1   MGSNFLSPPAKRSI------TGLPDPNPFPNGSSKRAKPSKPPQQPLPIPAGHVAFRLLC 54

Query: 59  HASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXXNDGS 118
           ++SR              LQ  TGAKIRIE++P ESPDR                 +   
Sbjct: 55  NSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKVMVRSHSG 114

Query: 119 GRQEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLGEAKQVGSVIGK 173
             + I+VSKAQEAL+RVF+RIL VAAE +GI +    VSCRL+ ++ Q GSVIGK
Sbjct: 115 DGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVIGK 169


>IMGA|Medtr4g121220.1 KH, type 1 chr04_pseudomolecule_IMGAG_V3
           28348757-28355344 E EGN_Mt090430 20090702
          Length = 616

 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 72/126 (57%), Gaps = 16/126 (12%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GHV FRLLCHASR              LQQ TGA+IRI++APV+ P+R            
Sbjct: 18  GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNL---- 73

Query: 110 XXXXXNDGSGRQEIDVS-KAQEALVRVFERILTV-AAESDGIGVAGGVVSCRLLGEAKQV 167
                 +G G    DVS   QEAL++VFERIL V AAESDG GV   VVSCRLL  A Q 
Sbjct: 74  ------NGDG----DVSLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQA 123

Query: 168 GSVIGK 173
           G VIGK
Sbjct: 124 GGVIGK 129


>IMGA|Medtr5g033090.1 KH, type 1 chr05_pseudomolecule_IMGAG_V3
           13482794-13476748 E EGN_Mt090430 20090702
          Length = 596

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           G ++FRL+CH+S              QL+++TG KI  E+A V + DR            
Sbjct: 37  GQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRK 96

Query: 110 XXXXXNDGSGRQEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLGEAKQVGS 169
                    G +E++VS AQE +VRVF+R+  + +E  G     G V  +LL  + QVG+
Sbjct: 97  GIVL-----GDREMEVSNAQEGVVRVFDRVWGLESEKGG----NGEVYGKLLAHSSQVGA 147

Query: 170 VIGK 173
           ++GK
Sbjct: 148 IVGK 151