Jatropha Genome Database

JcCB0302351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302351.10 - phase: 1 /partial
         (151 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding chr07_pseudomo...    49   1e-06

>IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding
           chr07_pseudomolecule_IMGAG_V3 3853072-3859438 E
           EGN_Mt090430 20090702
          Length = 366

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 22/126 (17%)

Query: 3   NFFNSGRSGGIVNQLPPRMVSDAENIANQPQPQSHNTRLCTSDGAVAADKLKEQE---LS 59
           + F+   SGG+V Q    +     ++A+  QPQ    +    +  V+ + LKEQE   + 
Sbjct: 194 DMFDPVVSGGMVTQQMLELPVSNPDMASNLQPQVWLGKPNKDNHIVSDNTLKEQEEMKID 253

Query: 60  IEGGTINISSVYSQGL-------------------LNTLTQALQSSGVDLSLASISVQIQ 100
               + +ISS YSQ L                   L TLTQALQSSGVDLS  ++SV I 
Sbjct: 254 SGSESDSISSAYSQRLSIADSRSSNVVHCDMFTRILGTLTQALQSSGVDLSQTNVSVDID 313

Query: 101 LGKRAN 106
           +G+R N
Sbjct: 314 VGRRTN 319