Jatropha Genome Database

JcCB0298051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0298051.10 + phase: 1 /partial
         (129 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g080490.1 UbiA prenyltransferase chr07_pseudomolecule...   187   1e-48

>IMGA|Medtr7g080490.1 UbiA prenyltransferase
           chr07_pseudomolecule_IMGAG_V3 17129933-17134686 E
           EGN_Mt090430 20090702
          Length = 400

 Score =  187 bits (475), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 100/109 (91%)

Query: 1   SLDLAVVLPLYVAGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIAC 60
           +LD ++VLPLY +GV WTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEW+TGFGIA 
Sbjct: 273 NLDSSIVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWLTGFGIAS 332

Query: 61  ISSLALSGVSADLGWPFYAFLAAASGHLTWQIWTVDLSSRADCNKKYVN 109
           +S LALSG +A+LGWP+YAFL  ASGHL WQIWTVDLSSR+DCN+K+V+
Sbjct: 333 LSGLALSGFNAELGWPYYAFLGVASGHLGWQIWTVDLSSRSDCNRKFVS 381