Jatropha Genome Database

JcCB0295761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0295761.10 - phase: 2 /partial
         (172 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g103670.1 Aminotransferase class-III; ; chr04_pseudom...   208   8e-55

>IMGA|Medtr4g103670.1 Aminotransferase class-III; ;
           chr04_pseudomolecule_IMGAG_V3 22386014-22374646 E
           EGN_Mt090430 20090702
          Length = 525

 Score =  208 bits (530), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 110/138 (79%), Gaps = 15/138 (10%)

Query: 12  GSFSHGFTYSGHPVSCAVAIEALKIYKYGENIPEQVSKIAPKFQDGLKAFSDSPIIGEIR 71
           G FSHGFTYSG PV C VA+EALKIYK   NI + V+KIAPKFQDG+KAFSDSPIIGEIR
Sbjct: 366 GVFSHGFTYSGSPVPCVVALEALKIYK-ERNIVDVVNKIAPKFQDGVKAFSDSPIIGEIR 424

Query: 72  GTGLILGTEFTDNKSPNDPFPPEWG--------------VGAYFGAQCEKHGMLVRVAGD 117
           GTGLIL TEF DNKSPNDPFPPEWG              VGAYFGAQCEK GMLVRVAGD
Sbjct: 425 GTGLILATEFVDNKSPNDPFPPEWGNETYQYLAGFLHSRVGAYFGAQCEKLGMLVRVAGD 484

Query: 118 NIMMSPPLTISPEEVDEV 135
           NIMMSPP  ISPEEVDE+
Sbjct: 485 NIMMSPPFIISPEEVDEL 502