Jatropha Genome Database

JcCB0294291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0294291.10 - phase: 0 /partial
         (171 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g009030.1 THUMP chr05_pseudomolecule_IMGAG_V3 1873897...    74   3e-14

>IMGA|Medtr5g009030.1 THUMP chr05_pseudomolecule_IMGAG_V3
           1873897-1878562 F EGN_Mt090430 20090702
          Length = 378

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 1   FYEELVHGKDTSVDLAELPNKPLNKKIKFVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FYEEL+ G   SV   +L +KPLNKKI F                               
Sbjct: 61  FYEELIDGAHPSV--TKLSDKPLNKKITFA-DSDSSSIDDDEEEEEKAQVPEGGEEKEDK 117

Query: 61  XXKSDVNQNSDAKSEVPTNEKLSFPNVENTCGANQREEKTKDSEDSGNDLENPTSE---A 117
             K DV+ + +   +  T EK   P ++        +   K ++D G D+++P +    A
Sbjct: 118 KPKLDVSNSDNTSHDNETGEKSDPPKIDGL----HAQAGDKANDDKG-DVDSPKTIEKIA 172

Query: 118 KEPPAKKQCLDTCVSKSTIHEK-MEEKSVDKLIEDELKELGDKSKRRFANLDSGC 171
            E PA K+C  T    S + EK +EEKS+DKLIEDEL EL DKSK+RFA L+SGC
Sbjct: 173 DELPAVKECCKTTAPTSNLGEKKVEEKSIDKLIEDELVELRDKSKKRFAKLESGC 227