Jatropha Genome Database

JcCB0293861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293861.10 - phase: 0 /partial
         (99 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g037220.1 Adenine nucleotide translocator 1 chr08_pse...    57   3e-09
IMGA|Medtr2g117590.1 Mitochondrial substrate carrier chr02_pseud...    49   8e-07

>IMGA|Medtr8g037220.1 Adenine nucleotide translocator 1
           chr08_pseudomolecule_IMGAG_V3 8013525-8008899 E
           EGN_Mt090430 20090702
          Length = 401

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 24/101 (23%)

Query: 1   MADRQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQATPY 60
           M D+ Q P++ Q VA Q  LS                  +Y ++ ++G+Y N  FQ  P 
Sbjct: 37  MVDQVQRPNLVQNVARQTGLS------------------MYQKR-SFGSYSNPAFQ-YPM 76

Query: 61  LSL--VGSTTSPVFVNSPSEKGIAGFALDFLMGGVSAAVSK 99
           +      +T SP+FV +P+EKG   F +DFLMGGVSAAVSK
Sbjct: 77  MPACNAATTASPIFVAAPAEKG--NFLVDFLMGGVSAAVSK 115


>IMGA|Medtr2g117590.1 Mitochondrial substrate carrier
          chr02_pseudomolecule_IMGAG_V3 27673245-27668971 E
          EGN_Mt090430 20090702
          Length = 362

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 25/93 (26%)

Query: 1  MAD-RQQYPSITQKVAGQVHLSSILSHDVQCRSMAFQRPTIYHRQFAYGNYCNVGFQATP 59
          M D R QYP++ QK      L S LS  V       ++P ++ +QF              
Sbjct: 2  MTDKRHQYPTVAQKFG----LRSNLSPHVANSYRGSEKPVLFQQQF-------------- 43

Query: 60 YLSLVGSTTSPVFVNSPSEKGIAGFALDFLMGG 92
                S+++ VFV SPSEK  A FA DFLMGG
Sbjct: 44 ------SSSNAVFVPSPSEKSFASFATDFLMGG 70