Jatropha Genome Database

JcCB0293691.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293691.20 - phase: 1 /partial
         (337 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g026110.1 Cyclin-like F-box chr02_pseudomolecule_IMGA...    67   1e-11
IMGA|Medtr1g013790.1 Cyclin-like F-box chr01_pseudomolecule_IMGA...    54   1e-07
IMGA|Medtr7g138390.3 Leucine-rich repeat 2 chr07_pseudomolecule_...    52   6e-07
IMGA|Medtr7g138390.2 Leucine-rich repeat 2 chr07_pseudomolecule_...    51   7e-07
IMGA|Medtr7g138390.1 Leucine-rich repeat 2 chr07_pseudomolecule_...    51   7e-07

>IMGA|Medtr2g026110.1 Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 7083652-7076263 E
           EGN_Mt090430 20090702
          Length = 610

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 27/239 (11%)

Query: 104 CESMLELSLVNCIISPGRGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQK-SRNLRSI 162
           C S+  L L  C +   +GLA V  +CK LE ++L  C G+ D  ++ LA    ++L+S+
Sbjct: 165 CASLKSLDLQGCYVGD-QGLAAVGQRCKQLEDLNLRFCEGLTDTGLVELALGVGKSLKSL 223

Query: 163 SLRVPSDFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILA 222
            +   +              TD S++AVA +C  LE++ L   D EF         G+LA
Sbjct: 224 GVAACAKI------------TDISMEAVASHCGSLETLSL---DSEFVHN-----QGVLA 263

Query: 223 LIQMCP-IRELSLDHVYSFNDTGMEALCMAQF-LETLELVRCQEISDEGLQ-LAAHFPRL 279
           + + CP ++ L L  + +  D  ++A+ ++   LE L L   Q  +D+GL+ +     +L
Sbjct: 264 VAKGCPHLKSLKLQCI-NLTDDALKAVGVSCLSLELLALYSFQRFTDKGLRAIGNGCKKL 322

Query: 280 CILRLRKCLGMTDDGLMPL-IGSYKLETLTVEDCPQISERGVQGAARTVSFRQDLSWMY 337
             L L  C  ++D GL  +  G  +L  L V  C  I   G+    ++     +L+ +Y
Sbjct: 323 KNLTLSDCYFLSDKGLEAIATGCKELTHLEVNGCHNIGTLGLDSVGKSCLHLSELALLY 381



 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 138/323 (42%), Gaps = 40/323 (12%)

Query: 9   GILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYS 68
           G++++  G   L  L L  C NVTS        K  +L+ L ++ C V  +G    L   
Sbjct: 131 GLIALADGFPKLEKLKLIWCSNVTSFGLSSLASKCASLKSLDLQGCYVGDQG----LAAV 186

Query: 69  WRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPGRGLACVLG 128
            ++ K+L+   D N R+ +      +   +  L   +S+  L +  C       +  V  
Sbjct: 187 GQRCKQLE---DLNLRFCEGLTDTGL--VELALGVGKSLKSLGVAACAKITDISMEAVAS 241

Query: 129 KCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLK 188
            C +LE + LD    V +  ++ +A+   +L+S+ L+  +              TDD+LK
Sbjct: 242 HCGSLETLSLDSEF-VHNQGVLAVAKGCPHLKSLKLQCIN-------------LTDDALK 287

Query: 189 AVAQNCKMLESVRLSFSDGEFPSFSSFTLNGILALIQMC-PIRELSLDHVYSFNDTGMEA 247
           AV  +C  LE + L        SF  FT  G+ A+   C  ++ L+L   Y  +D G+EA
Sbjct: 288 AVGVSCLSLELLAL-------YSFQRFTDKGLRAIGNGCKKLKNLTLSDCYFLSDKGLEA 340

Query: 248 LCMA-QFLETLELVRCQEISDEGLQLAA----HFPRLCILRLRKCLGMTDDGLMPL-IGS 301
           +    + L  LE+  C  I   GL        H   L +L    C  + D GL+ +  G 
Sbjct: 341 IATGCKELTHLEVNGCHNIGTLGLDSVGKSCLHLSELALLY---CQRIGDLGLLQVGKGC 397

Query: 302 YKLETLTVEDCPQISERGVQGAA 324
             L+ L + DC  I +  + G A
Sbjct: 398 QFLQALHLVDCSSIGDEAMCGIA 420



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 70/330 (21%)

Query: 9   GILSVVVGCKILTVLHLNRCLNVTSVEWLEYLGK-LETLEDLSIKNCRVIGEGDLIKLGY 67
           G+ ++  GCK LT L +N C N+ ++  L+ +GK    L +L++  C+ IG+  L+++G 
Sbjct: 337 GLEAIATGCKELTHLEVNGCHNIGTL-GLDSVGKSCLHLSELALLYCQRIGDLGLLQVGK 395

Query: 68  SWRKVKKLQFEVDANYRYMKVYDRLAVDRWQKQLVPCESMLELSLVNCIISPGRGLACVL 127
             + ++ L                         LV C S+ + ++  C I+ G       
Sbjct: 396 GCQFLQALH------------------------LVDCSSIGDEAM--CGIATG------- 422

Query: 128 GKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSL 187
             C+NL+K+H+  C  + +  II + +  ++L  +S+R                  D +L
Sbjct: 423 --CRNLKKLHIRRCYEIGNKGIIAVGENCKSLTDLSIRFCDRVG------------DGAL 468

Query: 188 KAVAQNCKMLE-SVRLSFSDGEFPSFSSFTLNGILALIQMCP-IRELSLDHVYSFNDTGM 245
            A+A+ C +   +V      G+          G++A+ +  P +  L +  + +  D  M
Sbjct: 469 IAIAEGCSLHYLNVSGCHQIGDV---------GLIAIARGSPQLCYLDVSVLQNLGDMAM 519

Query: 246 EALC-MAQFLETLELVRCQEISDEGLQLAAHFPRLCIL----RLRKCLGMTDDGLMPLIG 300
             L      L+ + L  C++ISD GL   AH  + C +     +  C  +T  G+  ++ 
Sbjct: 520 AELGENCSLLKEIVLSHCRQISDVGL---AHLVKSCTMLESCHMVYCSSITSAGVATVVS 576

Query: 301 SY-KLETLTVEDCPQISERGVQGAARTVSF 329
           S   ++ + VE   ++S R  + A   +S+
Sbjct: 577 SCPNIKKVLVEK-WKVSNRTKRRAGSVISY 605


>IMGA|Medtr1g013790.1 Cyclin-like F-box
           chr01_pseudomolecule_IMGAG_V3 2680576-2684082 E
           EGN_Mt090430 20090702
          Length = 643

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 39/245 (15%)

Query: 104 CESMLELSLVNCIISPGRGLACVLGKCKNLEKIHLDMCVGVRDCDIIGLAQKSRNLRSIS 163
           C S+   SL N       GL  +   C+ LEK+ L  C  + D  +I +A+K  NL  +S
Sbjct: 188 CPSLKSFSLWNVSSVGDEGLIEIANGCQKLEKLDLCKCPAISDKALITVAKKCPNLTELS 247

Query: 164 LR-VPSDFSXXXXXXXXXXXTDDSLKAVAQNCKMLESVRLS-----FSDGEFPSFSSFTL 217
           L   PS               ++ L+A+ + C  L+++ +         G    FSS +L
Sbjct: 248 LESCPS-------------IRNEGLQAIGKFCPNLKAISIKDCAGVGDQGIAGLFSSTSL 294

Query: 218 NGILALIQMCPIRELSL-----------DHVYSF----NDTGMEALCMA---QFLETLEL 259
                 +Q   + +LSL           D V +F    ++ G   +  A     L++L +
Sbjct: 295 VLTKVKLQALAVSDLSLAVIGHYGKTVTDLVLNFLPNVSERGFWVMGNANGLHKLKSLTI 354

Query: 260 VRCQEISDEGLQ-LAAHFPRLCILRLRKCLGMTDDGLMPLI-GSYKLETLTVEDCPQISE 317
             C+ ++D G++ +    P L  + L KC  ++D+GL+     +  LE+L +E+C +I++
Sbjct: 355 ASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAAISLESLQLEECHRITQ 414

Query: 318 RGVQG 322
            G  G
Sbjct: 415 FGFFG 419


>IMGA|Medtr7g138390.3 Leucine-rich repeat 2
           chr07_pseudomolecule_IMGAG_V3 32822166-32827170 E
           EGN_Mt090430 20090702
          Length = 605

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 130/334 (38%), Gaps = 52/334 (15%)

Query: 16  GCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYSWRKVKKL 75
           GC +L  + ++RC  V+    L  +   E LE ++  +C       L +L        K 
Sbjct: 284 GCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHC-------LSELSAPLTNGLK- 335

Query: 76  QFEVDANYRYMKVY--DRLAVDRWQKQLV--PCESMLELSLVNCIISPGRGLACVLGKCK 131
                 N +++ V   D + V  +  Q++   C+S++EL L  CI     G+  V+G C 
Sbjct: 336 ------NLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCC- 388

Query: 132 NLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVA 191
           NL  + L  C  V D  I  +A    NL  + L                  T+  L  + 
Sbjct: 389 NLTTLDLTCCRFVTDAAISTIANSCPNLACLKLE------------SCDMVTEIGLYQIG 436

Query: 192 QNCKMLESVRLSFSDG------------------EFPSFSSFTLNGILALIQMCP-IREL 232
            +C MLE + L+   G                  +    ++ +  G+  +   CP + EL
Sbjct: 437 SSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTEL 496

Query: 233 SLDHVYSFNDTGMEALCMA-QFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMT 291
            L       D G+ AL      L  L L  C  I+D GL+  ++   L    LR    +T
Sbjct: 497 DLYRCVRIGDDGLAALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNIT 556

Query: 292 DDGLMPLIGSYK-LETLTVEDCPQISERGVQGAA 324
             G+  +  S K L  L ++ C ++ + G +  A
Sbjct: 557 SIGIKAVAVSCKRLANLDLKHCEKLDDTGFRALA 590


>IMGA|Medtr7g138390.2 Leucine-rich repeat 2
           chr07_pseudomolecule_IMGAG_V3 32822166-32826493 E
           EGN_Mt090430 20090702
          Length = 623

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 130/334 (38%), Gaps = 52/334 (15%)

Query: 16  GCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYSWRKVKKL 75
           GC +L  + ++RC  V+    L  +   E LE ++  +C       L +L        K 
Sbjct: 284 GCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHC-------LSELSAPLTNGLK- 335

Query: 76  QFEVDANYRYMKVY--DRLAVDRWQKQLV--PCESMLELSLVNCIISPGRGLACVLGKCK 131
                 N +++ V   D + V  +  Q++   C+S++EL L  CI     G+  V+G C 
Sbjct: 336 ------NLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCC- 388

Query: 132 NLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVA 191
           NL  + L  C  V D  I  +A    NL  + L                  T+  L  + 
Sbjct: 389 NLTTLDLTCCRFVTDAAISTIANSCPNLACLKLE------------SCDMVTEIGLYQIG 436

Query: 192 QNCKMLESVRLSFSDG------------------EFPSFSSFTLNGILALIQMCP-IREL 232
            +C MLE + L+   G                  +    ++ +  G+  +   CP + EL
Sbjct: 437 SSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTEL 496

Query: 233 SLDHVYSFNDTGMEALCMA-QFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMT 291
            L       D G+ AL      L  L L  C  I+D GL+  ++   L    LR    +T
Sbjct: 497 DLYRCVRIGDDGLAALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNIT 556

Query: 292 DDGLMPLIGSYK-LETLTVEDCPQISERGVQGAA 324
             G+  +  S K L  L ++ C ++ + G +  A
Sbjct: 557 SIGIKAVAVSCKRLANLDLKHCEKLDDTGFRALA 590


>IMGA|Medtr7g138390.1 Leucine-rich repeat 2
           chr07_pseudomolecule_IMGAG_V3 32822166-32827170 E
           EGN_Mt090430 20090702
          Length = 679

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 130/334 (38%), Gaps = 52/334 (15%)

Query: 16  GCKILTVLHLNRCLNVTSVEWLEYLGKLETLEDLSIKNCRVIGEGDLIKLGYSWRKVKKL 75
           GC +L  + ++RC  V+    L  +   E LE ++  +C       L +L        K 
Sbjct: 284 GCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHC-------LSELSAPLTNGLK- 335

Query: 76  QFEVDANYRYMKVY--DRLAVDRWQKQLV--PCESMLELSLVNCIISPGRGLACVLGKCK 131
                 N +++ V   D + V  +  Q++   C+S++EL L  CI     G+  V+G C 
Sbjct: 336 ------NLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCC- 388

Query: 132 NLEKIHLDMCVGVRDCDIIGLAQKSRNLRSISLRVPSDFSXXXXXXXXXXXTDDSLKAVA 191
           NL  + L  C  V D  I  +A    NL  + L                  T+  L  + 
Sbjct: 389 NLTTLDLTCCRFVTDAAISTIANSCPNLACLKLE------------SCDMVTEIGLYQIG 436

Query: 192 QNCKMLESVRLSFSDG------------------EFPSFSSFTLNGILALIQMCP-IREL 232
            +C MLE + L+   G                  +    ++ +  G+  +   CP + EL
Sbjct: 437 SSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTEL 496

Query: 233 SLDHVYSFNDTGMEALCMA-QFLETLELVRCQEISDEGLQLAAHFPRLCILRLRKCLGMT 291
            L       D G+ AL      L  L L  C  I+D GL+  ++   L    LR    +T
Sbjct: 497 DLYRCVRIGDDGLAALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNIT 556

Query: 292 DDGLMPLIGSYK-LETLTVEDCPQISERGVQGAA 324
             G+  +  S K L  L ++ C ++ + G +  A
Sbjct: 557 SIGIKAVAVSCKRLANLDLKHCEKLDDTGFRALA 590