Jatropha Genome Database

JcCB0293391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0293391.10 - phase: 0 /partial
         (347 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g089230.1 hypothetical protein chr06_pseudomolecule_I...    77   1e-14

>IMGA|Medtr6g089230.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 18197351-18199395 E
           EGN_Mt090430 20090702
          Length = 135

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 23/128 (17%)

Query: 45  MKPEMEITLVFNEIEGHHEQSDFIALHQLFASRLTNYFTVHPEACDIPEAILPDPFNQSK 104
           MKP+++ITLVF+ +E + +QSD +AL + F  RL N+F +HPE  DIPEA L + F+Q  
Sbjct: 1   MKPDLKITLVFDVVEDYSKQSDDLALIRYFNYRLINFFNLHPEGTDIPEATLSELFSQR- 59

Query: 105 RTAFGGEVSDIPEVKLPEPVSQSQTFATEQLLANASTEDLPTTVESEPPSKSSHMHPSFS 164
              +     D P                     N STE   T+ E E    + H+ PSF 
Sbjct: 60  --PYNLIFKDGP--------------------VNLSTELSSTSNEIELSLNNLHLSPSFK 97

Query: 165 RHFSEKII 172
           RHFS+K +
Sbjct: 98  RHFSQKNV 105