Jatropha Genome Database
- JcCB0292291.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0292291.10 + phase: 1 /pseudo/partial
(439 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g103750.1 Immunoglobulin/major histocompatibility com... 384 e-107
IMGA|Medtr4g073860.1 Zinc finger, FYVE/PHD-type chr04_pseudomole... 217 1e-56
IMGA|Medtr4g073850.1 hypothetical protein chr04_pseudomolecule_I... 78 7e-15
IMGA|Medtr7g133080.1 GCN5-related N-acetyltransferase; Zinc fing... 65 1e-10
IMGA|Medtr5g079630.1 Zinc finger, RING-type; Agenet; Zinc finger... 59 6e-09
IMGA|Medtr7g124380.1 Zinc finger, FYVE/PHD-type chr07_pseudomole... 55 5e-08
IMGA|Medtr1g086280.1 HMG-I and HMG-Y, DNA-binding; Zinc finger, ... 55 6e-08
IMGA|Medtr4g165650.1 SNF2-related; Chromo; Helicase, C-terminal;... 54 2e-07
IMGA|Medtr5g024460.1 GCN5-related N-acetyltransferase; Zinc fing... 51 1e-06
IMGA|Medtr5g024380.1 GCN5-related N-acetyltransferase; Zinc fing... 51 1e-06
IMGA|Medtr4g076220.1 GCN5-related N-acetyltransferase; Zinc fing... 49 4e-06
IMGA|AC233662_51.1 Zinc finger, FYVE/PHD-type AC233662.1 243724-... 48 7e-06
>IMGA|Medtr4g103750.1 Immunoglobulin/major histocompatibility
complex; DDT; Zinc finger, FYVE/PHD-type
chr04_pseudomolecule_IMGAG_V3 22426782-22432803 E
EGN_Mt090430 20090702
Length = 1274
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/318 (60%), Positives = 233/318 (73%), Gaps = 1/318 (0%)
Query: 5 SALTEEKPMKSCHEWPREPVVLPPKAQLPPSSQNLDLSGISISDFFSVYACLRXXXXXXX 64
+++TEEKP E + V PK QLPPSS+NL L I + +FFSVYA LR
Sbjct: 566 TSVTEEKPSMPGSEKYEQCNVPIPKLQLPPSSKNLHLDDIPVLEFFSVYAYLRSFSTLLF 625
Query: 65 XXXXXXXXXVAALKCNSPSALFDCIHVSVLQTLRKHLECLSNEGSESASNCLRSLDWDLL 124
VAALK PS L D I+VS+L TLRKHLE LS+EG +SAS CLR+L+WD L
Sbjct: 626 LSPFELEDFVAALKSEIPSILLDNIYVSILHTLRKHLEFLSSEGCQSASICLRNLNWDFL 685
Query: 125 DLNTWPVFMVEYLLIHGSDLKPGFDLTLLKLLKSDYYKQSVSVKVEILRCLCDDMIEVEA 184
DL TWP+FM EYLLIH S+ K FD +L +DYYKQ V++K+EIL+ LCDDMIE +
Sbjct: 686 DLVTWPMFMAEYLLIHSSEFKISFDANH-SILGTDYYKQPVNLKLEILQYLCDDMIETDT 744
Query: 185 IRSELNRRSSGSEFDLDFDRNTTIGALKKKRAGMDLSGGSCITEDAVDDSTDWNSDECCL 244
IR+E+NRRS E + FD+N KKKRA MD+SGGSC+TE+ VDD+TD NSDECCL
Sbjct: 745 IRAEMNRRSLVIETGMGFDQNIYFDTGKKKRAAMDVSGGSCLTEEIVDDTTDLNSDECCL 804
Query: 245 CKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAIDRHKPWMKPRKSLRGAELF 304
CKMDG+LICCDGCPAA+HS+CVG+A+DSLPEGDW+CPECAI H+ MK R+SLRGA+L
Sbjct: 805 CKMDGNLICCDGCPAAFHSRCVGIASDSLPEGDWYCPECAIGTHRASMKSRRSLRGADLL 864
Query: 305 GVDPYGRLYFSSCGYLLV 322
G+DP+G LYF SCGYLLV
Sbjct: 865 GMDPHGCLYFDSCGYLLV 882
>IMGA|Medtr4g073860.1 Zinc finger, FYVE/PHD-type
chr04_pseudomolecule_IMGAG_V3 14744887-14748258 E
EGN_Mt090430 20090702
Length = 897
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 169/296 (57%), Gaps = 32/296 (10%)
Query: 74 VAALKCNSPSALFDCIHVSVLQTLRKHLECLSNEGSESASNCLRSLDWDLLDLNTWPVFM 133
V AL P+ LFD IH+S+++ LR+HLE LS+EG E AS CLR DW LLD TW F+
Sbjct: 204 VGALNYRGPNTLFDAIHISLMRVLRRHLESLSSEGFELASQCLRCNDWSLLDTLTWSGFV 263
Query: 134 VEYLLIHGSDLKPGFDLTLLKLLKSDYYKQSVSVKVEILRCLCDDMIEVEAIRSELNRRS 193
+ YL+++G P + ++ S+YY VS K+ IL+ LCDD++E E +++E+N R
Sbjct: 264 ILYLVVNGYTKGPEWKGFYDEVFSSEYYLLPVSRKLMILQILCDDVLESEELKTEMNTRK 323
Query: 194 SGSEFDLDFD----------------RNTTIGALKKKRAGMDLSG-------GSCI---- 226
SE +D D R T + K A +S G+ +
Sbjct: 324 E-SEVGMDDDAEDILPAETGPRKVYPRYTRTSFCEDKEAVKLVSASNAGNQPGNSVSNCR 382
Query: 227 -TEDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPECAI 285
TE D D N DEC LC MDG+LICCDGCP+AYHS+C+GV +PEG W+CPEC I
Sbjct: 383 DTESTGDGDVDRNGDECRLCGMDGTLICCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKI 442
Query: 286 DRHKPWMKPRKSLRGAELFGVDPYGRLYFSSCGYLLVLLVFMRQIIILALXIMLYV 341
D P + SLRGAE+FG D YG+L+ +C + LLV+++ + L L M +V
Sbjct: 443 DMAGPTIAKGTSLRGAEVFGKDLYGQLFMGTCDH---LLVYVQHLSGLTLRTMKFV 495
>IMGA|Medtr4g073850.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 14743962-14742961 H
EGN_Mt090430 20090702
Length = 142
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 27/120 (22%)
Query: 22 EPVVLPPKAQLPPSSQNLDLSGISISDFFSVYACLRXXXXXXXXXXXXXXXXVAALKCNS 81
E + LPP L PSS+ + + S+S SVY
Sbjct: 46 ETMHLPPSLHLSPSSETIGVPEPSVSHLLSVYGA-------------------------- 79
Query: 82 PSALFDCIHVSVLQTLRKHLECLSNEGSESASNCLRSLDWDLLDLNTWPVFMVEYLLIHG 141
LFD IH+S+++ LR+HLE LS+EG E AS CLR DW LD TW F++ YL++ G
Sbjct: 80 -RTLFDAIHISLMRVLRRHLESLSSEGFELASQCLRCNDWSFLDTMTWYAFVILYLVVSG 138
>IMGA|Medtr7g133080.1 GCN5-related N-acetyltransferase; Zinc finger,
FYVE/PHD-type chr07_pseudomolecule_IMGAG_V3
31022663-31020273 H EGN_Mt090430 20090702
Length = 796
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 211 LKKKRAGMDLSGGSCITEDAVDDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVAN 270
K +R D G CI E +S N + C +C G L+ CD CP+A+H C+G+
Sbjct: 457 FKCQREARDQKGSHCIGEA---NSEANNDNVCSICGFGGDLVLCDRCPSAFHLGCLGL-- 511
Query: 271 DSLPEGDWFCPEC 283
D +P+GDWFCP C
Sbjct: 512 DRVPDGDWFCPTC 524
>IMGA|Medtr5g079630.1 Zinc finger, RING-type; Agenet; Zinc finger,
FYVE/PHD-type; chr05_pseudomolecule_IMGAG_V3
29696677-29701197 H EGN_Mt090430 20090702
Length = 982
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 226 ITEDAVDDSTDWNSDE-CCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
ITE +D + +D C +C G LI CD CP+AYH C+ + + +P+GDWFCP C
Sbjct: 771 ITEKPHNDLFEGENDNICSVCNYGGELILCDQCPSAYHKNCLNL--EGIPDGDWFCPSC 827
>IMGA|Medtr7g124380.1 Zinc finger, FYVE/PHD-type
chr07_pseudomolecule_IMGAG_V3 29184001-29177130 E
EGN_Mt090430 20090702
Length = 555
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 202 FDRNTTIGALKKKRAGMDLSGGSCITEDAVDDSTDW------NSDECCLCKMDGSLICCD 255
F+ + + KK A + S G + E ++ S D N D C +C G+L+ CD
Sbjct: 144 FEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCVVCWDGGNLLLCD 203
Query: 256 GCPAAYHSKCVGVANDSLPEGDWFCPECA--IDRHKPWMKPRKSLRGAELFGVDP 308
GCP A+H +C ++ S+P GDW+C C R K + + GVDP
Sbjct: 204 GCPRAFHKECASLS--SIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDP 256
>IMGA|Medtr1g086280.1 HMG-I and HMG-Y, DNA-binding; Zinc finger,
FYVE/PHD-type chr01_pseudomolecule_IMGAG_V3
17022849-17018628 E EGN_Mt090430 20090702
Length = 1106
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 236 DWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
D N D C +C G LICCDGCP+ +H C+ + P GDW C C
Sbjct: 914 DPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIK--KFPSGDWHCAYC 959
>IMGA|Medtr4g165650.1 SNF2-related; Chromo; Helicase, C-terminal;
Zinc finger, FYVE/PHD-type; ; ;
chr04_pseudomolecule_IMGAG_V3 41778652-41770478 E
EGN_Mt090430 20090702
Length = 1372
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 241 ECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
EC +C + G+L+CCD CP YH +C+ +P G W CP C
Sbjct: 37 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 79
>IMGA|Medtr5g024460.1 GCN5-related N-acetyltransferase; Zinc finger,
FYVE/PHD-type chr05_pseudomolecule_IMGAG_V3
9715271-9716557 H EGN_Mt090430 20090702
Length = 428
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 232 DDSTDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
++S N + C +C G L CD CP+A+H C+G+ + +P G+WFCP C
Sbjct: 119 ENSEAKNDNVCSICGFGGDLALCDRCPSAFHLGCLGL--NRVPIGEWFCPTC 168
>IMGA|Medtr5g024380.1 GCN5-related N-acetyltransferase; Zinc finger,
FYVE/PHD-type chr05_pseudomolecule_IMGAG_V3
9682601-9681315 H EGN_Mt090430 20090702
Length = 428
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 231 VDDSTDWNSDECC-LCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
V + ++ N+D C +C G L CD CP+A+H C+G+ + +P G+WFCP C
Sbjct: 117 VKEKSEANNDNVCSICGFGGDLALCDRCPSAFHLGCLGL--NRVPIGEWFCPTC 168
>IMGA|Medtr4g076220.1 GCN5-related N-acetyltransferase; Zinc finger,
FYVE/PHD-type chr04_pseudomolecule_IMGAG_V3
15089438-15093354 H EGN_Mt090430 20090702
Length = 572
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 238 NSDE-CCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
NSDE C CK G+L+CCDGC A+H C+ V +S P+ W+C C
Sbjct: 178 NSDEHCSKCKQRGNLLCCDGCQRAFHLGCIPV--ESPPKEKWYCEYC 222
>IMGA|AC233662_51.1 Zinc finger, FYVE/PHD-type AC233662.1
243724-237189 E EGN_Mt090430 20090702
Length = 752
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 234 STDWNSDECCLCKMDGSLICCDGCPAAYHSKCVGVANDSLPEGDWFCPEC 283
+T + D C +C G LI C+GCP A+H+ C+G+ S+PE W C C
Sbjct: 549 TTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLH--SVPESGWHCLNC 596