Jatropha Genome Database

JcCB0288671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0288671.10 - phase: 0 /pseudo
         (255 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...   265   1e-71
IMGA|Medtr3g100710.1 AAA ATPase, central region chr03_pseudomole...   145   2e-35
IMGA|Medtr5g020710.1 hypothetical protein chr05_pseudomolecule_I...    50   1e-06

>IMGA|Medtr3g100750.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
           EGN_Mt090430 20090702
          Length = 355

 Score =  265 bits (678), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/172 (77%), Positives = 137/172 (79%), Gaps = 1/172 (0%)

Query: 26  TNKGKNVVVAGTPP-DIKAVPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYG 84
           T+KGK V+ AG P    KA  WVEKYRPQSL DVAAHRDIVDTIDRLT+ENRLPHLLLYG
Sbjct: 13  TDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYG 72

Query: 85  PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXXX 144
           PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGI VVRQQI                
Sbjct: 73  PPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPS 132

Query: 145 XXXXXXXEADAMTKDAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRCT 196
                  EADAMTKDAQFALRRVIEKYTK+TRF LICNHVNKIIPALQSRCT
Sbjct: 133 VKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCT 184


>IMGA|Medtr3g100710.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24169522-24164910 E
           EGN_Mt090430 20090702
          Length = 339

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 95/157 (60%), Gaps = 6/157 (3%)

Query: 45  PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 104
           PWVEKYRP+ + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 105 Q-YHNMILELNASDDRGIGVVRQQIXXXXXXXXXXXXXXXX-----XXXXXXXEADAMTK 158
           + Y + +LELNASDDRGI VVR +I                            EAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTE 129

Query: 159 DAQFALRRVIEKYTKNTRFTLICNHVNKIIPALQSRC 195
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166


>IMGA|Medtr5g020710.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 7831697-7834680 H
           EGN_Mt090430 20090702
          Length = 686

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 41  IKAVP--WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVA 98
           ++++P  W +K++P SL     ++     +  L S+   PH+LL GP G+GK    +A  
Sbjct: 407 VESIPQLWADKHKPASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFL 466

Query: 99  RKLYG 103
           R++YG
Sbjct: 467 REIYG 471