Jatropha Genome Database

JcCB0286801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0286801.10 - phase: 0 /partial
         (218 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g107870.1 Zinc finger, CCCH-type chr04_pseudomolecule...    96   2e-20

>IMGA|Medtr4g107870.1 Zinc finger, CCCH-type
           chr04_pseudomolecule_IMGAG_V3 23681270-23675049 E
           EGN_Mt090430 20090702
          Length = 393

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 113/239 (47%), Gaps = 52/239 (21%)

Query: 1   VERERNLLNSKLIEFENLIRNPYVAPAKSALSQSPFA-------------------GVTP 41
           VE+E+N+L SKL+EF  L+  PY  P  S+L+   F                    G   
Sbjct: 185 VEKEKNILQSKLVEFNKLLSEPYKMPLTSSLNIQNFQSNGANVNAFQPATQNFQSNGANA 244

Query: 42  PAIATSDQNNAPPLVSSFSQLGPSLNVESGTRPSSSSNNAFGQPNILSNSSQTSGSFGIS 101
            A   + QNN P  VSSFSQLG SLN   G RPS+          ++S   Q S   G  
Sbjct: 245 NAFQPATQNNGPLSVSSFSQLGASLNPGFG-RPSAP---------LMSTPVQPSSIGGGG 294

Query: 102 NFAPANSGSISSQLPNQASGNPFSSNVA--GFSNSSAIINQSNPFDSSAVTKQVTNSSTA 159
           NF   NSG++     +    NPF + V   GF  S++   Q  PF  +         +T+
Sbjct: 295 NFFTPNSGNLFGSGISGGQVNPFPTPVGLTGFPGSTSQFQQP-PFGFN---------NTS 344

Query: 160 QHVIISNSPNLASNAVGQATEHIHSTNGMQKGAVDASIWLKESWNPGEIPEEAPPDQYI 218
              +   +P++  N           T+ ++  +VD SIWLKE WNPGEIPE+APPD+++
Sbjct: 345 STTMFQTAPDVQLN-----------TSQVENVSVDDSIWLKEKWNPGEIPEQAPPDRFV 392