Jatropha Genome Database

JcCB0285631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285631.20 - phase: 1 /pseudo/partial
         (90 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g118370.1 Nucleotide-binding, alpha-beta plait chr07_...    72   5e-14

>IMGA|Medtr7g118370.1 Nucleotide-binding, alpha-beta plait
           chr07_pseudomolecule_IMGAG_V3 27924352-27927181 E
           EGN_Mt090430 20090702
          Length = 141

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%)

Query: 42  RENMNAKYLDGWVIFVDPAKPREQRPPPSPVQEPTDTGYRTNKTIGWCG 90
           RE MNAK+LDGWVIFVDPAKPRE RPP     +P+ TG+  NKT+GWCG
Sbjct: 93  REGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSQTGFTVNKTVGWCG 141