Jatropha Genome Database

JcCB0285141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285141.10 - phase: 0 /partial
         (412 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC146721_9.1 6-phosphogluconate dehydrogenase, C-terminal A...    60   2e-09
IMGA|Medtr4g125730.1 2-hydroxy-3-oxopropionate reductase chr04_p...    49   6e-06

>IMGA|AC146721_9.1 6-phosphogluconate dehydrogenase, C-terminal
          AC146721.7 44310-43796 E EGN_Mt090430 20090702
          Length = 120

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 10/62 (16%)

Query: 11 GLAVMGQNLALNIAEKGFPISVYNRTASKVDETVARAKQEGDLPLYGFRDPESFVNSIQK 70
          GLAV+GQNLALNIAEKGF              T+ RAKQEG+LP+YG+ D + F  + ++
Sbjct: 13 GLAVIGQNLALNIAEKGFQFQF----------TIERAKQEGNLPIYGYHDFKYFRENYEQ 62

Query: 71 PR 72
           R
Sbjct: 63 IR 64


>IMGA|Medtr4g125730.1 2-hydroxy-3-oxopropionate reductase
          chr04_pseudomolecule_IMGAG_V3 29721395-29718572 E
          EGN_Mt090430 20090702
          Length = 230

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query: 5  IRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVARAKQEGDLPLYGFRDPESF 64
          + IG  GL +MG+ +++N+   GF ++V+NRT SK DE V      G+ P    +  +  
Sbjct: 1  MEIGFLGLGIMGKAMSINLLRHGFKVTVWNRTLSKCDELVEHGASVGETPAAVVKKCKYT 60

Query: 65 VNSIQKPRVIIMLV 78
          +  +  P   + +V
Sbjct: 61 IAMLSDPAAALAVV 74