Jatropha Genome Database

JcCB0285121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0285121.10 + phase: 1 /pseudo/partial
         (241 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU651589_6.1 GTP-binding protein, HSR1-related CU651589.4 3...    84   5e-17

>IMGA|CU651589_6.1 GTP-binding protein, HSR1-related CU651589.4
           33538-37140 E EGN_Mt090430 20090702
          Length = 373

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 13/133 (9%)

Query: 26  IAIVGRPNVGKSSILNALLREDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 85
           IAIVGRPNVGKSS+LNA  + +R IV+ I+GTTRD I+   +  +G    L+DTAGIR  
Sbjct: 127 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIN-INGIPITLLDTAGIR-- 183

Query: 86  AAVASSGSVTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIE--KEGKG--- 140
                +  + E + V R+    R +D++ + + A+   T +D ++ ERI+  KE  G   
Sbjct: 184 ----DTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKESTGSST 239

Query: 141 -CLIVVNKWDTIP 152
             ++VVNK D  P
Sbjct: 240 PVILVVNKIDCKP 252