Jatropha Genome Database

JcCB0284961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284961.10 + phase: 0 /pseudo/partial
         (189 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096720.1 Transcriptional factor B3 chr07_pseudomolec...   237   3e-63
IMGA|Medtr4g036540.1 Transcriptional factor B3; Zinc finger, CW-...    65   2e-11
IMGA|Medtr7g080350.1 Transcriptional factor B3 chr07_pseudomolec...    65   3e-11
IMGA|Medtr2g014020.1 Transcriptional factor B3 chr02_pseudomolec...    63   8e-11
IMGA|Medtr5g083230.1 Transcriptional factor B3 chr05_pseudomolec...    63   1e-10

>IMGA|Medtr7g096720.1 Transcriptional factor B3
           chr07_pseudomolecule_IMGAG_V3 21710203-21713365 H
           EGN_Mt090430 20090702
          Length = 314

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/174 (68%), Positives = 139/174 (79%), Gaps = 13/174 (7%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +KAAEA LPVLESKEGI +SMDDLDGLHVWSFKYR+WPNNNSRMYVLENTGDFV+TH
Sbjct: 143 VLPKKAAEAFLPVLESKEGILLSMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTH 202

Query: 85  GLQLGDFIM----------VIQARKASDEDVYANIAMTAVNDIFLHDYEVNKSSSFYMNY 134
           GL+ GD IM          VIQA+KA D+D Y   A   +N IF+ DYEVNK S F + Y
Sbjct: 203 GLRFGDSIMVYQDNQNHNYVIQAKKACDQDEYMEEANDTINHIFVDDYEVNK-SCFDVAY 261

Query: 135 PMVDNTGLSFIYDTTTIISNDSPLDFLGGSLTNYSRIGQMENFGSVENLSLDEF 188
           P +++T +SFIYDTT  ISNDSPLDFLGGS+TNYSRIG +E FGSVENLSLD+F
Sbjct: 262 PAMNDTSMSFIYDTT--ISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDF 313


>IMGA|Medtr4g036540.1 Transcriptional factor B3; Zinc finger,
           CW-type chr04_pseudomolecule_IMGAG_V3 8953556-8945623 E
           EGN_Mt090430 20090702
          Length = 900

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 21  RLM*IVLQKA-AEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           R+  +VL KA AEA+ P +   EG+ + + D+ G   W F++R+WPNNNSRMYVLE    
Sbjct: 326 RIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKE-WMFQFRFWPNNNSRMYVLEGVTP 384

Query: 80  FVNTHGLQLGDFI 92
            + +  LQ GD +
Sbjct: 385 CIQSMQLQAGDTV 397


>IMGA|Medtr7g080350.1 Transcriptional factor B3
           chr07_pseudomolecule_IMGAG_V3 16965049-16963033 H
           EGN_Mt090430 20090702
          Length = 253

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 13/105 (12%)

Query: 21  RLM*IVLQKAA-EAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           RL  +VL K+  E + P +    G+++ ++D+ G  +  FK+R+WPNN+SR+YVLE    
Sbjct: 25  RLGRMVLPKSCVETYFPPISEPGGVYLQIEDVKGKKL-VFKFRFWPNNSSRIYVLEGVHA 83

Query: 80  FVNTHGLQLGDFI----------MVIQARKASDEDVYA-NIAMTA 113
           ++ +  LQ+GDF+          ++I  R+AS   +   NIAM+ 
Sbjct: 84  WIQSMQLQVGDFVTFNRMDPGEKLIIGFRRASVSSIQVNNIAMSK 128


>IMGA|Medtr2g014020.1 Transcriptional factor B3
           chr02_pseudomolecule_IMGAG_V3 3428987-3437369 E
           EGN_Mt090430 20090702
          Length = 834

 Score = 63.2 bits (152), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 16/99 (16%)

Query: 25  IVLQKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGDFVNTH 84
           ++ +K AE + P +   EG+ + + D  G   W F++R+WPNNNSRMYVLE     + + 
Sbjct: 315 VLPKKCAETYFPPISQPEGLPLKILDAKGKE-WIFQFRFWPNNNSRMYVLEGVTPCIQSM 373

Query: 85  GLQLGDFI----------MVIQARKA-----SDEDVYAN 108
            LQ GD +          +V+  RKA     SD+D  AN
Sbjct: 374 QLQAGDTVTFSRLEPEGRLVMGFRKATNPLPSDQDNEAN 412


>IMGA|Medtr5g083230.1 Transcriptional factor B3
           chr05_pseudomolecule_IMGAG_V3 31558410-31553964 E
           EGN_Mt090430 20090702
          Length = 754

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 21  RLM*IVLQKA-AEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYWPNNNSRMYVLENTGD 79
           R+  +VL KA AEA LP +   EG+ +   D+ G + W+F++R+WPNNNSRMYVLE    
Sbjct: 301 RIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMG-NEWTFQFRFWPNNNSRMYVLEGVTP 359

Query: 80  FVNTHGLQLGDFI 92
            + +  L  GD +
Sbjct: 360 CIQSLQLNAGDTV 372